Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CIBNLLCD_23 | 67364 | 68068 | WalR | 1.93e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CIBNLLCD_3 | 71072 | 70875 | CspR | 3.93e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIBNLLCD_1 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_2 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_3 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_4 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_5 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_6 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_7 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_8 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_9 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_10 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_11 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_12 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_13 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_14 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_15 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_16 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_17 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_18 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_19 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_20 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_21 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_22 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_23 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_24 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_25 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_26 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_27 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_28 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_29 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_30 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_31 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_32 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_33 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_34 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_35 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_36 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_37 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_38 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_41 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_42 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_43 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_45 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_46 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_47 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_48 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_49 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_50 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_51 | 1.0 | 0.0 | 1.0 |
| CIBNLLCD_56 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_67 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_78 | 0.0 | 1.0 | 0.0 |
| CIBNLLCD_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIBNLLCD_15 | 30985 | 33444 | False | Siphoviridae | VOG4603, VOG0806, VOG4322, VOG2338 |
| CIBNLLCD_17 | 112 | 25217 | False | Siphoviridae | VOG6455, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG5821, VOG4570, VOG1315 |
| CIBNLLCD_34 | 1145 | 35685 | False | Siphoviridae | VOG1563, VOG0198, VOG4694, VOG6579, VOG4570, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918, VOG6083, VOG1246 |
| CIBNLLCD_45 | 1376 | 9933 | False | Siphoviridae | VOG9759, VOG4813, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG6428, VOG10059, VOG4552, VOG5353, VOG8520, VOG0862 |
| CIBNLLCD_67 | 176455 | 183743 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051 |
Phigaro v2.4.0 (Database: Jan. 2024 release)