Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHPDGCMG_100 | 72692 | 73582 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| OHPDGCMG_22 | 937 | 1737 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHPDGCMG_22 | 937 | 1737 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHPDGCMG_100 | 72692 | 73579 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| OHPDGCMG_22 | 940 | 1737 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OHPDGCMG_69 | 408 | 1087 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHPDGCMG_1 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_2 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_3 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_4 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_5 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_6 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_7 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_9 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_10 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_11 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_12 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_13 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_14 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_15 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_16 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_17 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_18 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_19 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_20 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_21 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_22 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_23 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_24 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_25 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_26 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_27 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_28 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_29 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_30 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_31 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_32 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_33 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_34 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_35 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_36 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_37 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_38 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_39 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_40 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_41 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_42 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_43 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_44 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_45 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_46 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_47 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_48 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_49 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_50 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_51 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_52 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_53 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_54 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_55 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_56 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_57 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_59 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_60 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_61 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_62 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_63 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_64 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_65 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_66 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_67 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_68 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_69 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_70 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_71 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_72 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_73 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_74 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_75 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_76 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_77 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_78 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_79 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_80 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_81 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_82 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_83 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_84 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_85 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_86 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_87 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_88 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_89 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_90 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_91 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_92 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_93 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_94 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_95 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_96 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_97 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_98 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_99 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_100 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_101 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_102 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_103 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_104 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_105 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_106 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_107 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_108 | 0.0 | 1.0 | 0.0 |
| OHPDGCMG_109 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_110 | 1.0 | 0.0 | 1.0 |
| OHPDGCMG_111 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHPDGCMG_23 | 563439 | 574911 | False | Siphoviridae | VOG3992, |
| OHPDGCMG_56 | 111721 | 120055 | False | Siphoviridae | VOG1146, |
Phigaro v2.4.0 (Database: Jan. 2024 release)