Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCOADHCA_22 | 179429 | 180292 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| GCOADHCA_22 | 177386 | 178186 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
| GCOADHCA_79 | 72644 | 73534 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCOADHCA_22 | 177386 | 178186 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCOADHCA_22 | 179432 | 180292 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| GCOADHCA_79 | 72644 | 73531 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| GCOADHCA_22 | 177386 | 178183 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GCOADHCA_53 | 296 | 975 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCOADHCA_1 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_2 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_3 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_4 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_5 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_6 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_7 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_8 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_9 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_10 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_11 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_12 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_13 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_14 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_15 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_16 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_17 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_18 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_19 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_20 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_21 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_22 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_23 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_24 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_25 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_26 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_27 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_28 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_29 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_30 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_31 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_32 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_33 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_34 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_35 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_36 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_37 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_38 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_39 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_40 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_41 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_42 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_43 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_44 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_45 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_46 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_47 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_48 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_49 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_50 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_51 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_52 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_53 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_54 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_55 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_56 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_57 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_58 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_59 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_60 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_61 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_62 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_63 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_64 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_65 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_66 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_67 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_68 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_69 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_70 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_71 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_72 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_73 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_74 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_75 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_76 | 1.0 | 0.0 | 1.0 |
| GCOADHCA_77 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_78 | 0.0 | 1.0 | 0.0 |
| GCOADHCA_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCOADHCA_11 | 563440 | 574912 | False | Siphoviridae | VOG3992, |
| GCOADHCA_44 | 111721 | 120055 | False | Siphoviridae | VOG1146, |
Phigaro v2.4.0 (Database: Jan. 2024 release)