Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIFILAHL_26 | 277983 | 278783 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| CIFILAHL_26 | 276634 | 277770 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| CIFILAHL_26 | 273966 | 275891 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| CIFILAHL_103 | 21858 | 22748 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| CIFILAHL_48 | 9199 | 11124 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CIFILAHL_26 | 277983 | 278783 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| CIFILAHL_26 | 276604 | 277770 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| CIFILAHL_48 | 9199 | 11124 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIFILAHL_103 | 21858 | 22745 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CIFILAHL_26 | 277986 | 278783 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| CIFILAHL_26 | 276604 | 277767 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| CIFILAHL_48 | 9202 | 11124 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CIFILAHL_26 | 273966 | 275888 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CIFILAHL_90 | 117 | 796 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIFILAHL_1 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_3 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_4 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_5 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_6 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_7 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_8 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_9 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_10 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_11 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_12 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_13 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_14 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_15 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_16 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_17 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_18 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_19 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_20 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_21 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_22 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_23 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_24 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_25 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_26 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_27 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_28 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_29 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_30 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_31 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_32 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_33 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_34 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_35 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_36 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_37 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_38 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_39 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_40 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_41 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_42 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_43 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_44 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_45 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_46 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_47 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_48 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_49 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_50 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_51 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_52 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_53 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_54 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_55 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_56 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_57 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_58 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_59 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_60 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_61 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_62 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_63 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_64 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_65 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_66 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_67 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_68 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_69 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_70 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_71 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_72 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_73 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_74 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_75 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_76 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_77 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_78 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_79 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_80 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_81 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_82 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_83 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_84 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_85 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_86 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_87 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_88 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_89 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_90 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_91 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_92 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_93 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_94 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_95 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_96 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_97 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_98 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_99 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_100 | 1.0 | 0.0 | 1.0 |
| CIFILAHL_101 | 0.0 | 1.0 | 0.0 |
| CIFILAHL_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIFILAHL_31 | 3142 | 14221 | False | Unknown | VOG3699, |
| CIFILAHL_48 | 20640 | 31043 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)