Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BCMGIAME_63 | 25513 | 27438 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| BCMGIAME_60 | 21858 | 22748 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| BCMGIAME_47 | 9200 | 11125 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| BCMGIAME_61 | 2046 | 2846 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| BCMGIAME_61 | 697 | 1833 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| BCMGIAME_54 | 136 | 1101 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BCMGIAME_54 | 136 | 1101 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| BCMGIAME_61 | 2046 | 2846 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| BCMGIAME_61 | 667 | 1833 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| BCMGIAME_47 | 9200 | 11125 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BCMGIAME_60 | 21858 | 22745 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| BCMGIAME_54 | 136 | 1098 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| BCMGIAME_61 | 2049 | 2846 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| BCMGIAME_61 | 667 | 1830 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| BCMGIAME_47 | 9203 | 11125 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BCMGIAME_63 | 25513 | 27435 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BCMGIAME_1 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_2 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_3 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_4 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_5 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_6 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_7 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_8 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_9 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_10 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_11 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_12 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_13 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_15 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_16 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_17 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_19 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_20 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_21 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_22 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_23 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_24 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_25 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_26 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_27 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_28 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_29 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_30 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_31 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_32 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_33 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_34 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_35 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_36 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_37 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_38 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_39 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_40 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_41 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_42 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_43 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_44 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_45 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_46 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_47 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_48 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_49 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_50 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_51 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_52 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_53 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_54 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_55 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_56 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_57 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_58 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_59 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_60 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_61 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_62 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_63 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_64 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_65 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_66 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_67 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_68 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_69 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_70 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_71 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_72 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_73 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_74 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_75 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_76 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_77 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_78 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_79 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_80 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_81 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_82 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_83 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_84 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_85 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_86 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_87 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_88 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_89 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_90 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_91 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_92 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_93 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_94 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_95 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_96 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_97 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_98 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_99 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_100 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_101 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_102 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_103 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_104 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_105 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_106 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_107 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_108 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_109 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_110 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_111 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_112 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_113 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_114 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_115 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_116 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_117 | 1.0 | 0.0 | 1.0 |
| BCMGIAME_118 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_119 | 0.0 | 1.0 | 0.0 |
| BCMGIAME_120 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BCMGIAME_47 | 20857 | 31044 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)