Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCCKPLOD_95 | 25513 | 27438 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| CCCKPLOD_88 | 21858 | 22748 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| CCCKPLOD_61 | 9200 | 11173 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| CCCKPLOD_97 | 2046 | 2846 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| CCCKPLOD_97 | 697 | 1833 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| CCCKPLOD_52 | 136 | 1101 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CCCKPLOD_52 | 136 | 1101 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| CCCKPLOD_97 | 2046 | 2846 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| CCCKPLOD_97 | 667 | 1833 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| CCCKPLOD_61 | 9200 | 11125 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCCKPLOD_88 | 21858 | 22745 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CCCKPLOD_52 | 136 | 1098 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| CCCKPLOD_97 | 2049 | 2846 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| CCCKPLOD_97 | 667 | 1830 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| CCCKPLOD_61 | 9203 | 11125 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CCCKPLOD_95 | 25513 | 27435 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CCCKPLOD_135 | 409 | 1088 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCCKPLOD_1 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_2 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_3 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_4 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_5 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_6 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_7 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_8 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_9 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_10 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_11 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_12 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_13 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_14 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_15 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_16 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_17 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_18 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_19 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_20 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_21 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_22 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_23 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_24 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_25 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_26 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_27 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_28 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_29 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_30 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_31 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_32 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_33 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_34 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_35 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_36 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_37 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_38 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_39 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_40 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_41 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_42 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_43 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_44 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_45 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_46 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_47 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_48 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_49 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_50 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_51 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_52 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_53 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_54 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_55 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_56 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_57 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_58 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_59 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_60 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_61 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_62 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_63 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_64 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_65 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_66 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_67 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_68 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_69 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_70 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_71 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_72 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_73 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_74 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_75 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_76 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_77 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_78 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_79 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_80 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_81 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_82 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_83 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_84 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_85 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_86 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_87 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_88 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_89 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_90 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_91 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_92 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_93 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_94 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_95 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_96 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_97 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_98 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_99 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_100 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_101 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_102 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_103 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_104 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_105 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_106 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_107 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_108 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_109 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_110 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_111 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_112 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_113 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_114 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_115 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_116 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_117 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_118 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_119 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_120 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_121 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_122 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_123 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_124 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_125 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_126 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_127 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_128 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_129 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_130 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_131 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_132 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_133 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_134 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_135 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_136 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_137 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_138 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_139 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_140 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_141 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_142 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_143 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_144 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_145 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_146 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_147 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_148 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_149 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_150 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_151 | 0.0 | 1.0 | 0.0 |
| CCCKPLOD_152 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_153 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_154 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_155 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_156 | 1.0 | 0.0 | 1.0 |
| CCCKPLOD_157 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCCKPLOD_61 | 20641 | 31515 | False | Siphoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)