Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDNINEIJ_45 | 40112 | 42037 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| BDNINEIJ_27 | 9818 | 10708 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| BDNINEIJ_112 | 943 | 2109 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| BDNINEIJ_114 | 70 | 1830 | tet(Q) | ARO:3000191 | tet(Q) | 89.25 | 89.19 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BDNINEIJ_112 | 78 | 730 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| BDNINEIJ_112 | 943 | 2109 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| BDNINEIJ_45 | 40112 | 42037 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDNINEIJ_27 | 9821 | 10708 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| BDNINEIJ_112 | 80 | 727 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| BDNINEIJ_112 | 946 | 2109 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| BDNINEIJ_45 | 40112 | 42034 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BDNINEIJ_114 | 49 | 1830 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.06 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BDNINEIJ_2 | 409 | 1088 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BDNINEIJ_1 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_2 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_3 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_4 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_5 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_6 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_7 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_8 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_9 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_10 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_11 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_12 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_14 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_15 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_16 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_17 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_18 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_19 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_20 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_21 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_22 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_23 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_24 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_25 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_26 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_27 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_28 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_29 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_30 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_31 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_32 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_33 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_34 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_35 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_36 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_37 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_38 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_39 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_40 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_41 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_42 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_43 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_44 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_45 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_46 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_47 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_48 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_49 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_50 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_51 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_52 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_53 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_54 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_55 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_56 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_57 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_58 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_59 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_60 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_61 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_62 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_63 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_64 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_65 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_66 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_67 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_68 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_69 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_70 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_71 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_72 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_73 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_74 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_75 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_76 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_77 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_78 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_79 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_80 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_81 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_82 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_83 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_84 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_85 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_86 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_87 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_88 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_89 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_90 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_91 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_92 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_93 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_94 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_95 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_96 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_97 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_98 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_99 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_100 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_101 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_102 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_103 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_104 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_105 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_106 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_107 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_108 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_109 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_110 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_111 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_112 | 1.0 | 0.0 | 1.0 |
| BDNINEIJ_113 | 0.0 | 1.0 | 0.0 |
| BDNINEIJ_114 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BDNINEIJ_45 | 19720 | 30594 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)