Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPPDHDIG_166 | 116309 | 117199 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| CPPDHDIG_66 | 22375 | 24300 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| CPPDHDIG_66 | 20493 | 21629 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| CPPDHDIG_66 | 19480 | 20280 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| CPPDHDIG_148 | 9655 | 10620 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| CPPDHDIG_116 | 21262 | 22554 | tet(Q) | ARO:3000191 | tet(Q) | 96.50 | 65.45 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPPDHDIG_66 | 19480 | 20280 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| CPPDHDIG_66 | 20493 | 21659 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| CPPDHDIG_148 | 9655 | 10620 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CPPDHDIG_148 | 9655 | 10620 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CPPDHDIG_148 | 9655 | 10620 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CPPDHDIG_148 | 9655 | 10620 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| CPPDHDIG_116 | 21262 | 23188 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPPDHDIG_166 | 116312 | 117199 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CPPDHDIG_148 | 9658 | 10620 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| CPPDHDIG_66 | 19480 | 20277 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| CPPDHDIG_66 | 20496 | 21659 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| CPPDHDIG_66 | 22378 | 24300 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
| CPPDHDIG_116 | 21262 | 22545 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 99.53 | 66.77 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPPDHDIG_5 | 1740 | 2419 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPPDHDIG_1 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_2 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_3 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_4 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_5 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_6 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_7 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_8 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_9 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_10 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_11 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_12 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_13 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_14 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_15 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_16 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_17 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_18 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_19 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_20 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_21 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_22 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_23 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_24 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_25 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_26 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_27 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_28 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_29 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_30 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_31 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_32 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_33 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_34 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_35 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_36 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_37 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_38 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_39 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_40 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_41 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_42 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_43 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_44 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_45 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_46 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_47 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_48 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_49 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_50 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_51 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_52 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_53 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_54 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_55 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_56 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_57 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_58 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_59 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_60 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_61 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_62 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_63 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_65 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_66 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_67 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_68 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_69 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_70 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_71 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_72 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_73 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_74 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_75 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_76 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_77 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_78 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_79 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_80 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_81 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_82 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_83 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_84 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_85 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_86 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_87 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_88 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_89 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_90 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_91 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_92 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_93 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_94 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_95 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_96 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_97 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_98 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_99 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_100 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_101 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_102 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_103 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_104 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_105 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_106 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_107 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_108 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_109 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_110 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_111 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_112 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_113 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_114 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_115 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_116 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_117 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_118 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_119 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_120 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_121 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_122 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_123 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_124 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_125 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_126 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_127 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_128 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_129 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_130 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_131 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_132 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_133 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_134 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_135 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_136 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_137 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_138 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_139 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_140 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_141 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_142 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_143 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_144 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_145 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_146 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_147 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_148 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_149 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_150 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_151 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_152 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_153 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_154 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_155 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_156 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_157 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_158 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_159 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_160 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_161 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_162 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_164 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_166 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_167 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_168 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_169 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_170 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_171 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_172 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_173 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_174 | 1.0 | 0.0 | 1.0 |
| CPPDHDIG_175 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_176 | 0.0 | 1.0 | 0.0 |
| CPPDHDIG_177 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPPDHDIG_116 | 3793 | 10503 | False | Unknown | VOG8909, |
Phigaro v2.4.0 (Database: Jan. 2024 release)