Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFPFGEMK_140 | 116311 | 117201 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| OFPFGEMK_129 | 24256 | 26181 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| OFPFGEMK_129 | 22377 | 23513 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| OFPFGEMK_129 | 21364 | 22164 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| OFPFGEMK_167 | 3 | 1529 | tet(Q) | ARO:3000191 | tet(Q) | 95.87 | 77.32 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OFPFGEMK_129 | 21364 | 22164 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| OFPFGEMK_129 | 22377 | 23543 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| OFPFGEMK_167 | 1 | 1529 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.54 | 79.39 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFPFGEMK_140 | 116314 | 117201 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| OFPFGEMK_129 | 21364 | 22161 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| OFPFGEMK_129 | 22380 | 23543 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| OFPFGEMK_167 | 3 | 1526 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.41 | 79.25 | WP_063856407.1 |
| OFPFGEMK_129 | 24259 | 26181 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OFPFGEMK_45 | 95 | 774 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OFPFGEMK_1 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_2 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_3 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_4 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_5 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_6 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_7 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_8 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_9 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_10 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_11 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_12 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_13 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_14 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_15 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_16 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_17 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_18 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_19 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_21 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_22 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_23 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_24 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_25 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_26 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_27 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_28 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_29 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_30 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_31 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_32 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_33 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_34 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_35 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_36 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_37 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_38 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_39 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_40 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_41 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_42 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_43 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_44 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_45 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_46 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_47 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_48 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_49 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_50 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_51 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_52 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_53 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_54 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_55 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_56 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_57 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_58 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_59 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_60 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_61 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_62 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_63 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_64 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_65 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_66 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_67 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_68 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_69 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_70 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_71 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_73 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_74 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_75 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_76 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_77 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_78 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_79 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_80 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_81 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_82 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_83 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_84 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_85 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_86 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_87 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_88 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_89 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_90 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_91 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_92 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_93 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_94 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_95 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_96 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_97 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_98 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_99 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_100 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_101 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_102 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_103 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_104 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_105 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_106 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_107 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_108 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_109 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_110 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_111 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_112 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_113 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_114 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_115 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_116 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_117 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_118 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_119 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_120 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_121 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_122 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_123 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_124 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_125 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_126 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_127 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_128 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_129 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_130 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_131 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_132 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_133 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_134 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_135 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_136 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_137 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_138 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_139 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_140 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_141 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_142 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_143 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_144 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_145 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_146 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_147 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_148 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_149 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_150 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_151 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_152 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_153 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_154 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_155 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_156 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_157 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_158 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_159 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_160 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_161 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_162 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_163 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_164 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_165 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_166 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_167 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_168 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_169 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_170 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_171 | 0.0 | 1.0 | 0.0 |
| OFPFGEMK_172 | 1.0 | 0.0 | 1.0 |
| OFPFGEMK_173 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OFPFGEMK_138 | 2532 | 11728 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)