Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IAGNBCCD_69 | 9818 | 10708 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| IAGNBCCD_93 | 9200 | 11125 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| IAGNBCCD_13 | 943 | 2109 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| IAGNBCCD_72 | 73 | 1833 | tet(Q) | ARO:3000191 | tet(Q) | 89.42 | 89.19 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IAGNBCCD_13 | 78 | 730 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| IAGNBCCD_13 | 943 | 2109 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| IAGNBCCD_93 | 9200 | 11125 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IAGNBCCD_69 | 9821 | 10708 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| IAGNBCCD_13 | 80 | 727 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| IAGNBCCD_13 | 946 | 2109 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| IAGNBCCD_93 | 9203 | 11125 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| IAGNBCCD_72 | 52 | 1833 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.23 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IAGNBCCD_16 | 2110 | 2789 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IAGNBCCD_2 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_3 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_4 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_5 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_6 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_7 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_8 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_9 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_10 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_11 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_12 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_13 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_14 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_15 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_16 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_17 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_18 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_19 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_20 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_21 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_22 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_23 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_24 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_25 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_26 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_27 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_28 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_29 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_30 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_31 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_32 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_33 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_34 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_35 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_36 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_37 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_38 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_39 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_40 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_41 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_42 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_43 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_44 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_45 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_46 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_47 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_48 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_49 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_50 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_51 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_52 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_53 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_54 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_55 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_56 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_57 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_58 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_59 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_60 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_61 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_62 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_63 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_64 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_65 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_66 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_67 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_68 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_69 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_70 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_71 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_72 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_73 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_74 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_75 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_76 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_77 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_78 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_79 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_80 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_81 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_82 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_83 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_84 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_85 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_86 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_87 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_88 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_89 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_90 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_91 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_92 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_93 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_94 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_95 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_96 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_97 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_98 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_99 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_100 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_101 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_102 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_103 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_104 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_105 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_106 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_107 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_108 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_109 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_110 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_111 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_112 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_113 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_114 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_115 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_116 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_117 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_118 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_119 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_120 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_121 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_122 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_123 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_124 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_125 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_126 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_127 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_128 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_129 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_130 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_131 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_132 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_133 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_134 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_135 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_136 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_137 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_138 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_139 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_140 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_141 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_142 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_143 | 0.0 | 1.0 | 0.0 |
| IAGNBCCD_144 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_145 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_146 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_147 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_148 | 1.0 | 0.0 | 1.0 |
| IAGNBCCD_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IAGNBCCD_93 | 20641 | 29837 | False | Unknown | VOG3992, |
| IAGNBCCD_94 | 59405 | 71634 | False | Siphoviridae | VOG4690, |
Phigaro v2.4.0 (Database: Jan. 2024 release)