Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OBDADIFO_56 | 316264 | 318024 | tet(Q) | ARO:3000191 | tet(Q) | 89.42 | 89.19 | Z21523.1 |
| OBDADIFO_61 | 56952 | 57842 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| OBDADIFO_85 | 22319 | 24244 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| OBDADIFO_7 | 921 | 2087 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OBDADIFO_7 | 56 | 708 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| OBDADIFO_7 | 921 | 2087 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| OBDADIFO_85 | 22319 | 24244 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OBDADIFO_61 | 56952 | 57839 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| OBDADIFO_7 | 58 | 705 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| OBDADIFO_7 | 924 | 2087 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| OBDADIFO_85 | 22319 | 24241 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OBDADIFO_56 | 316264 | 318045 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.23 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OBDADIFO_12 | 1 | 654 | repUS2 | 656 / 681 | 99.24 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OBDADIFO_1 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_2 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_3 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_4 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_5 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_6 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_7 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_8 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_9 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_10 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_11 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_12 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_14 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_15 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_16 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_17 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_18 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_19 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_20 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_21 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_22 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_23 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_24 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_25 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_26 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_28 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_29 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_30 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_31 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_33 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_34 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_35 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_36 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_37 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_38 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_39 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_40 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_41 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_42 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_43 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_44 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_45 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_46 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_47 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_48 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_49 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_50 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_51 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_52 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_53 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_54 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_55 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_56 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_57 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_58 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_59 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_60 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_61 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_62 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_63 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_64 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_65 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_66 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_67 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_68 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_69 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_70 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_71 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_72 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_73 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_74 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_75 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_76 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_77 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_78 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_79 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_80 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_81 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_82 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_83 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_84 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_85 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_86 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_87 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_88 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_89 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_90 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_91 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_92 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_93 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_94 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_95 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_96 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_97 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_98 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_99 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_100 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_101 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_102 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_103 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_104 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_105 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_106 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_107 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_108 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_109 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_110 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_111 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_112 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_113 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_114 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_115 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_116 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_117 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_118 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_119 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_120 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_121 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_122 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_123 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_124 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_125 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_126 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_127 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_128 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_129 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_130 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_131 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_132 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_133 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_134 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_135 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_136 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_137 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_138 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_139 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_140 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_141 | 0.0 | 1.0 | 0.0 |
| OBDADIFO_142 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_143 | 1.0 | 0.0 | 1.0 |
| OBDADIFO_144 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OBDADIFO_85 | 3605 | 12801 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)