Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BGPPCMFA_120 | 24278 | 26203 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| BGPPCMFA_120 | 22399 | 23535 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| BGPPCMFA_11 | 21858 | 22748 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| BGPPCMFA_120 | 21386 | 22186 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| BGPPCMFA_75 | 9200 | 11125 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BGPPCMFA_120 | 21386 | 22186 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| BGPPCMFA_120 | 22399 | 23565 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| BGPPCMFA_75 | 9200 | 11125 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BGPPCMFA_11 | 21858 | 22745 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| BGPPCMFA_120 | 21386 | 22183 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| BGPPCMFA_120 | 22402 | 23565 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| BGPPCMFA_75 | 9203 | 11125 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BGPPCMFA_120 | 24281 | 26203 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BGPPCMFA_12 | 1954 | 2633 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BGPPCMFA_1 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_2 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_3 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_4 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_5 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_6 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_7 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_8 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_9 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_10 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_11 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_12 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_13 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_14 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_15 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_16 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_17 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_18 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_19 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_20 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_21 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_22 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_23 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_24 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_25 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_26 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_27 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_28 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_29 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_30 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_31 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_32 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_33 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_34 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_35 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_36 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_37 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_38 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_39 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_40 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_41 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_42 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_43 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_44 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_45 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_46 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_47 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_48 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_49 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_50 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_51 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_52 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_53 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_54 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_55 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_56 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_57 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_58 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_59 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_60 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_61 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_62 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_63 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_64 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_65 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_66 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_67 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_68 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_69 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_70 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_71 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_72 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_73 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_74 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_75 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_76 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_77 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_78 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_79 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_80 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_81 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_82 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_83 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_84 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_85 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_86 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_87 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_88 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_89 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_90 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_91 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_92 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_93 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_94 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_95 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_96 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_97 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_98 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_99 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_100 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_101 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_102 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_103 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_104 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_105 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_106 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_107 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_108 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_109 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_110 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_111 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_112 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_113 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_114 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_115 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_116 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_117 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_118 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_119 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_120 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_121 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_122 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_123 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_124 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_125 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_126 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_127 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_128 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_129 | 0.0 | 1.0 | 0.0 |
| BGPPCMFA_130 | 1.0 | 0.0 | 1.0 |
| BGPPCMFA_131 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BGPPCMFA_75 | 20641 | 29837 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)