Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BMEPFKAF_39 | 77153 | 77953 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| BMEPFKAF_39 | 75804 | 76940 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| BMEPFKAF_39 | 73136 | 75061 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| BMEPFKAF_112 | 21858 | 22748 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| BMEPFKAF_65 | 9199 | 11172 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BMEPFKAF_39 | 77153 | 77953 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| BMEPFKAF_39 | 75774 | 76940 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| BMEPFKAF_65 | 9199 | 11124 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BMEPFKAF_112 | 21858 | 22745 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| BMEPFKAF_39 | 77156 | 77953 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| BMEPFKAF_39 | 75774 | 76937 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| BMEPFKAF_65 | 9202 | 11124 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BMEPFKAF_39 | 73136 | 75058 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BMEPFKAF_9 | 603 | 1282 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BMEPFKAF_1 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_2 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_3 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_4 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_5 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_6 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_7 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_8 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_9 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_10 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_11 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_12 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_13 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_14 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_15 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_16 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_17 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_18 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_19 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_20 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_21 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_22 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_23 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_24 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_25 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_26 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_27 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_28 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_29 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_30 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_31 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_32 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_33 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_34 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_35 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_36 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_37 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_38 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_39 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_40 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_41 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_42 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_43 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_44 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_45 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_46 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_47 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_48 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_49 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_50 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_51 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_52 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_53 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_54 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_55 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_56 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_57 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_58 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_59 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_60 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_61 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_62 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_63 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_64 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_65 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_66 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_67 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_68 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_69 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_70 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_71 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_72 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_73 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_74 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_75 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_76 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_77 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_78 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_79 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_80 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_81 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_82 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_83 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_84 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_85 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_86 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_87 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_88 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_89 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_90 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_91 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_92 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_93 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_94 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_95 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_96 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_97 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_98 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_99 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_100 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_101 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_102 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_103 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_104 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_105 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_106 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_107 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_108 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_109 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_110 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_111 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_112 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_113 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_114 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_115 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_116 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_117 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_119 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_120 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_121 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_122 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_123 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_124 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_125 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_126 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_127 | 0.0 | 1.0 | 0.0 |
| BMEPFKAF_128 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_129 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_130 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_131 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_132 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_133 | 1.0 | 0.0 | 1.0 |
| BMEPFKAF_134 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BMEPFKAF_65 | 20640 | 31514 | False | Siphoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)