Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHNEIIPF_207 | 24256 | 25842 | tet(Q) | ARO:3000191 | tet(Q) | 88.43 | 80.37 | Z21523.1 |
| CHNEIIPF_207 | 22377 | 23513 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| CHNEIIPF_207 | 21364 | 22164 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| CHNEIIPF_209 | 2961 | 3851 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| CHNEIIPF_120 | 644 | 2494 | tet(Q) | ARO:3000191 | tet(Q) | 96.75 | 93.91 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHNEIIPF_207 | 21364 | 22164 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| CHNEIIPF_207 | 22377 | 23543 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| CHNEIIPF_120 | 644 | 2494 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 96.11 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHNEIIPF_209 | 2964 | 3851 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CHNEIIPF_207 | 21364 | 22161 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| CHNEIIPF_207 | 22380 | 23543 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| CHNEIIPF_120 | 644 | 2494 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.51 | 96.26 | WP_063856407.1 |
| CHNEIIPF_207 | 24259 | 25839 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 88.99 | 82.22 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHNEIIPF_113 | 1740 | 2419 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHNEIIPF_1 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_2 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_3 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_4 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_5 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_6 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_7 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_8 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_9 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_10 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_11 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_12 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_13 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_14 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_15 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_16 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_17 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_18 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_19 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_20 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_21 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_22 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_23 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_24 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_25 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_26 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_27 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_28 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_29 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_30 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_31 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_32 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_33 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_34 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_35 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_36 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_37 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_38 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_39 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_40 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_41 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_42 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_43 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_44 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_45 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_46 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_47 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_48 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_49 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_50 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_51 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_52 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_53 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_54 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_55 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_56 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_57 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_58 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_59 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_60 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_61 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_62 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_63 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_64 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_65 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_66 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_67 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_68 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_69 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_70 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_71 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_72 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_73 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_74 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_75 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_76 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_77 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_78 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_79 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_80 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_81 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_82 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_83 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_85 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_86 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_87 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_88 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_89 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_90 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_91 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_92 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_93 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_94 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_95 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_96 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_97 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_98 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_99 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_100 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_101 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_102 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_103 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_104 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_105 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_106 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_107 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_108 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_109 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_110 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_111 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_112 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_113 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_114 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_115 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_116 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_117 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_118 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_119 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_120 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_121 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_122 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_123 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_124 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_125 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_126 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_127 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_128 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_129 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_130 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_131 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_132 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_133 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_134 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_135 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_136 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_137 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_138 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_139 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_140 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_141 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_142 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_143 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_144 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_145 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_147 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_148 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_149 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_150 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_151 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_152 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_153 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_154 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_155 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_156 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_157 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_158 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_159 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_160 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_161 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_163 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_164 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_165 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_166 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_167 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_168 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_169 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_170 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_171 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_172 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_173 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_174 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_175 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_176 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_177 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_178 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_179 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_180 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_181 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_182 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_183 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_184 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_185 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_186 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_187 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_188 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_189 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_190 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_191 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_192 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_193 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_194 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_195 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_196 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_197 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_198 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_199 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_200 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_201 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_202 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_203 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_204 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_205 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_206 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_207 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_208 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_209 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_210 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_211 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_212 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_213 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_214 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_215 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_216 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_217 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_218 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_219 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_220 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_221 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_222 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_223 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_224 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_225 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_226 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_227 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_228 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_229 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_230 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_231 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_232 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_233 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_234 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_235 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_236 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_237 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_238 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_239 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_240 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_241 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_242 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_243 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_244 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_245 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_246 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_247 | 1.0 | 0.0 | 1.0 |
| CHNEIIPF_248 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_249 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_250 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_251 | 0.0 | 1.0 | 0.0 |
| CHNEIIPF_252 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)