Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMHOMKFG_59 | 316264 | 318024 | tet(Q) | ARO:3000191 | tet(Q) | 89.42 | 89.19 | Z21523.1 |
| LMHOMKFG_62 | 56952 | 57842 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| LMHOMKFG_90 | 21264 | 23189 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LMHOMKFG_15 | 921 | 2087 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LMHOMKFG_15 | 56 | 708 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| LMHOMKFG_15 | 921 | 2087 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| LMHOMKFG_90 | 21264 | 23189 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMHOMKFG_62 | 56952 | 57839 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| LMHOMKFG_15 | 58 | 705 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| LMHOMKFG_15 | 924 | 2087 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| LMHOMKFG_90 | 21264 | 23186 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LMHOMKFG_59 | 316264 | 318045 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.23 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMHOMKFG_1 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_2 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_3 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_4 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_5 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_6 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_7 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_8 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_9 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_10 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_11 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_12 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_13 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_14 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_15 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_16 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_17 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_18 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_19 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_20 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_21 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_22 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_23 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_24 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_25 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_26 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_27 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_28 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_29 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_30 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_31 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_32 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_33 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_34 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_35 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_36 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_37 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_38 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_39 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_40 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_41 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_42 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_43 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_44 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_45 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_48 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_49 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_50 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_51 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_52 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_53 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_54 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_55 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_56 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_57 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_58 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_59 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_60 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_61 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_62 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_63 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_64 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_65 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_66 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_67 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_68 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_69 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_70 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_71 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_72 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_73 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_74 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_75 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_76 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_77 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_78 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_79 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_80 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_81 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_82 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_83 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_84 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_85 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_86 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_87 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_88 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_89 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_90 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_91 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_92 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_93 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_94 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_95 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_96 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_97 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_98 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_99 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_100 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_101 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_102 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_103 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_104 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_105 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_106 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_107 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_108 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_109 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_110 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_111 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_112 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_113 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_114 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_115 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_116 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_117 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_118 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_119 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_120 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_121 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_122 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_123 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_124 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_125 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_126 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_127 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_128 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_129 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_130 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_131 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_132 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_133 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_134 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_135 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_136 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_137 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_138 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_139 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_140 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_141 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_142 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_143 | 1.0 | 0.0 | 1.0 |
| LMHOMKFG_144 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_145 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_146 | 0.0 | 1.0 | 0.0 |
| LMHOMKFG_147 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMHOMKFG_90 | 2549 | 11746 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)