Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGOEBNEI_65 | 22183 | 24108 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NGOEBNEI_39 | 9818 | 10708 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| NGOEBNEI_1 | 943 | 2109 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| NGOEBNEI_46 | 73 | 1833 | tet(Q) | ARO:3000191 | tet(Q) | 89.42 | 89.19 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGOEBNEI_1 | 78 | 730 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| NGOEBNEI_1 | 943 | 2109 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| NGOEBNEI_65 | 22183 | 24108 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGOEBNEI_39 | 9821 | 10708 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| NGOEBNEI_1 | 80 | 727 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| NGOEBNEI_1 | 946 | 2109 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| NGOEBNEI_65 | 22183 | 24105 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NGOEBNEI_46 | 52 | 1833 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.23 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NGOEBNEI_3 | 1 | 454 | repUS2 | 455 / 681 | 99.78 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGOEBNEI_1 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_2 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_3 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_4 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_5 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_6 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_7 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_8 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_9 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_10 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_11 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_12 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_13 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_14 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_15 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_16 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_17 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_18 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_19 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_20 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_21 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_22 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_23 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_24 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_25 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_26 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_27 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_28 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_29 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_30 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_31 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_32 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_33 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_34 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_35 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_36 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_37 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_38 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_39 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_40 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_41 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_42 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_43 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_44 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_45 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_46 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_47 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_48 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_49 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_50 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_51 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_52 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_53 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_54 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_55 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_56 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_57 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_58 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_59 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_60 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_61 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_62 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_63 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_64 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_65 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_66 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_67 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_68 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_69 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_70 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_71 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_72 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_73 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_74 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_75 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_76 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_77 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_78 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_79 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_80 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_81 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_82 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_83 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_84 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_85 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_86 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_87 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_88 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_89 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_90 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_91 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_92 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_93 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_94 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_95 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_96 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_97 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_98 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_99 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_100 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_101 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_102 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_103 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_104 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_105 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_106 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_107 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_108 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_109 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_110 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_111 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_112 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_113 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_114 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_115 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_116 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_117 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_118 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_119 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_120 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_121 | 1.0 | 0.0 | 1.0 |
| NGOEBNEI_122 | 0.0 | 1.0 | 0.0 |
| NGOEBNEI_123 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGOEBNEI_65 | 3469 | 12665 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)