Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCMNBBIH_97 | 223499 | 224464 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| FCMNBBIH_106 | 28843 | 29979 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| FCMNBBIH_106 | 27830 | 28630 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| FCMNBBIH_105 | 21836 | 22726 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| FCMNBBIH_145 | 9178 | 11094 | tet(Q) | ARO:3000191 | tet(Q) | 96.39 | 97.11 | Z21523.1 |
| FCMNBBIH_113 | 183 | 2108 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FCMNBBIH_97 | 223499 | 224464 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| FCMNBBIH_106 | 27830 | 28630 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| FCMNBBIH_106 | 28843 | 30009 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| FCMNBBIH_145 | 9178 | 11096 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 99.64 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCMNBBIH_105 | 21836 | 22723 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| FCMNBBIH_97 | 223502 | 224464 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| FCMNBBIH_106 | 27830 | 28627 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| FCMNBBIH_106 | 28846 | 30009 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| FCMNBBIH_145 | 9181 | 11094 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 99.53 | WP_063856407.1 |
| FCMNBBIH_113 | 186 | 2108 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FCMNBBIH_20 | 2063 | 2742 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCMNBBIH_2 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_4 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_5 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_6 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_7 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_8 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_9 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_10 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_11 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_12 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_13 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_14 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_15 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_16 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_17 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_18 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_19 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_20 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_21 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_22 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_23 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_24 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_25 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_26 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_27 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_28 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_29 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_30 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_31 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_32 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_33 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_34 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_35 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_36 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_37 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_38 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_39 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_40 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_41 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_42 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_43 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_44 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_45 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_46 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_47 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_48 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_49 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_50 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_51 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_52 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_53 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_54 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_55 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_56 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_57 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_58 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_59 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_60 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_61 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_62 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_63 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_64 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_65 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_66 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_67 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_68 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_69 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_70 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_71 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_72 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_73 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_74 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_75 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_76 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_77 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_78 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_79 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_80 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_81 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_82 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_83 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_84 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_85 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_86 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_87 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_88 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_89 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_90 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_91 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_92 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_93 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_94 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_95 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_96 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_97 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_98 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_99 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_100 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_101 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_102 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_103 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_104 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_105 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_106 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_107 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_108 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_109 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_110 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_111 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_112 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_113 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_114 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_115 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_116 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_117 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_118 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_119 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_120 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_121 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_122 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_123 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_124 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_125 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_126 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_127 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_128 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_129 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_130 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_131 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_132 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_133 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_134 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_135 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_136 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_137 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_138 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_139 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_140 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_141 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_142 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_143 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_144 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_145 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_146 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_147 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_148 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_149 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_150 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_151 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_152 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_153 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_154 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_155 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_156 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_157 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_158 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_159 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_160 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_161 | 1.0 | 0.0 | 1.0 |
| FCMNBBIH_162 | 0.0 | 1.0 | 0.0 |
| FCMNBBIH_163 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCMNBBIH_99 | 18797 | 29200 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)