Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJJLLIPM_33 | 108993 | 109883 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| PJJLLIPM_33 | 9199 | 11124 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PJJLLIPM_107 | 943 | 2109 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| PJJLLIPM_38 | 73 | 1833 | tet(Q) | ARO:3000191 | tet(Q) | 89.42 | 89.19 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJJLLIPM_107 | 78 | 730 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| PJJLLIPM_107 | 943 | 2109 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| PJJLLIPM_33 | 9199 | 11124 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJJLLIPM_33 | 108993 | 109880 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| PJJLLIPM_107 | 80 | 727 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| PJJLLIPM_107 | 946 | 2109 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PJJLLIPM_33 | 9202 | 11124 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PJJLLIPM_38 | 52 | 1833 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.23 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJJLLIPM_8 | 2003 | 2682 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJJLLIPM_1 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_2 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_3 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_4 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_5 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_6 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_7 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_8 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_9 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_10 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_11 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_12 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_13 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_14 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_15 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_16 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_17 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_18 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_19 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_20 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_21 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_22 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_23 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_24 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_25 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_26 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_27 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_28 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_29 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_30 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_31 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_32 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_33 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_34 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_35 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_36 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_37 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_38 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_39 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_40 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_41 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_42 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_43 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_44 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_45 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_46 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_47 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_48 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_49 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_50 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_51 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_52 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_53 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_54 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_55 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_56 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_57 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_58 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_59 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_60 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_61 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_62 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_63 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_64 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_65 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_66 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_67 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_68 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_69 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_70 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_71 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_72 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_73 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_74 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_75 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_76 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_77 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_78 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_79 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_80 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_81 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_82 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_83 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_84 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_85 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_86 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_87 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_88 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_89 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_90 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_91 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_92 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_93 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_94 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_96 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_97 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_98 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_99 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_100 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_101 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_102 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_103 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_104 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_105 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_106 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_107 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_108 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_109 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_110 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_111 | 0.0 | 1.0 | 0.0 |
| PJJLLIPM_112 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_113 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_114 | 1.0 | 0.0 | 1.0 |
| PJJLLIPM_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJJLLIPM_33 | 20640 | 31919 | False | Siphoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)