Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJMABGKI_136 | 116311 | 117201 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JJMABGKI_70 | 77131 | 77931 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| JJMABGKI_70 | 75782 | 76918 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| JJMABGKI_70 | 73114 | 75039 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| JJMABGKI_134 | 9177 | 11093 | tet(Q) | ARO:3000191 | tet(Q) | 96.39 | 97.11 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJMABGKI_70 | 77131 | 77931 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| JJMABGKI_70 | 75752 | 76918 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| JJMABGKI_134 | 9177 | 11095 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 99.64 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJMABGKI_136 | 116314 | 117201 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JJMABGKI_70 | 77134 | 77931 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| JJMABGKI_70 | 75752 | 76915 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| JJMABGKI_134 | 9180 | 11093 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 99.53 | WP_063856407.1 |
| JJMABGKI_70 | 73114 | 75036 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JJMABGKI_21 | 1540 | 2219 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJMABGKI_1 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_2 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_3 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_5 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_6 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_7 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_8 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_9 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_10 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_11 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_12 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_13 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_14 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_15 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_16 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_17 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_18 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_19 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_20 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_21 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_22 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_23 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_24 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_25 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_26 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_27 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_28 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_29 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_30 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_31 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_32 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_33 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_34 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_35 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_36 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_37 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_38 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_39 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_40 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_41 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_42 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_43 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_44 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_45 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_46 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_47 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_48 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_49 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_50 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_51 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_52 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_53 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_54 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_55 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_58 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_59 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_60 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_61 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_62 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_63 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_64 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_65 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_66 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_67 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_68 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_69 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_70 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_71 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_72 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_73 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_74 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_75 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_76 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_77 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_78 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_79 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_80 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_81 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_82 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_83 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_84 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_85 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_86 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_87 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_88 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_89 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_90 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_91 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_92 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_93 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_94 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_95 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_96 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_97 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_98 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_99 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_100 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_101 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_102 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_103 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_104 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_105 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_106 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_107 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_108 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_109 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_110 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_111 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_112 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_113 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_114 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_115 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_116 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_117 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_118 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_119 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_120 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_121 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_122 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_123 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_124 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_125 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_126 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_127 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_128 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_129 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_130 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_131 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_132 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_133 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_134 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_135 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_136 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_137 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_138 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_139 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_140 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_141 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_142 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_143 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_144 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_145 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_146 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_147 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_148 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_149 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_150 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_151 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_152 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_153 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_154 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_155 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_156 | 1.0 | 0.0 | 1.0 |
| JJMABGKI_157 | 0.0 | 1.0 | 0.0 |
| JJMABGKI_158 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJMABGKI_97 | 18277 | 28680 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)