Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNNMNMGJ_35 | 57087 | 57977 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| PNNMNMGJ_61 | 39548 | 41521 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| PNNMNMGJ_68 | 18666 | 20426 | tet(Q) | ARO:3000191 | tet(Q) | 89.42 | 89.19 | Z21523.1 |
| PNNMNMGJ_2 | 943 | 2109 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PNNMNMGJ_2 | 78 | 730 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 81.52 | M17808 |
| PNNMNMGJ_2 | 943 | 2109 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| PNNMNMGJ_61 | 39596 | 41521 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNNMNMGJ_35 | 57087 | 57974 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| PNNMNMGJ_2 | 80 | 727 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 81.20 | WP_002682030.1 |
| PNNMNMGJ_2 | 946 | 2109 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PNNMNMGJ_61 | 39596 | 41518 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PNNMNMGJ_68 | 18666 | 20447 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 89.23 | 92.67 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PNNMNMGJ_13 | 2065 | 2744 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNNMNMGJ_1 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_2 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_3 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_4 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_5 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_6 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_7 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_8 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_9 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_10 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_11 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_12 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_13 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_14 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_15 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_16 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_17 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_18 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_19 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_20 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_21 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_22 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_23 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_24 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_25 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_26 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_27 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_28 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_29 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_30 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_31 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_32 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_33 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_34 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_35 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_36 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_37 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_38 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_39 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_40 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_41 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_42 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_43 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_44 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_45 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_46 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_47 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_48 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_49 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_50 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_51 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_52 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_53 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_54 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_55 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_56 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_57 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_58 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_59 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_60 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_61 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_62 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_63 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_64 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_65 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_66 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_67 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_68 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_69 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_70 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_71 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_72 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_73 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_74 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_75 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_76 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_77 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_78 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_79 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_80 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_81 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_82 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_83 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_84 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_85 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_86 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_87 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_88 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_89 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_90 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_91 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_92 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_93 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_94 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_95 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_96 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_97 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_98 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_99 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_100 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_101 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_102 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_103 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_104 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_105 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_106 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_107 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_108 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_109 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_110 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_111 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_112 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_113 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_114 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_115 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_116 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_117 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_118 | 0.0 | 1.0 | 0.0 |
| PNNMNMGJ_119 | 1.0 | 0.0 | 1.0 |
| PNNMNMGJ_120 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNNMNMGJ_61 | 19204 | 30078 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)