Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMDEPOOM_38 | 213319 | 214209 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| MMDEPOOM_14 | 38005 | 39930 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| MMDEPOOM_20 | 862 | 1827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MMDEPOOM_20 | 862 | 1827 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| MMDEPOOM_20 | 862 | 1827 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| MMDEPOOM_20 | 862 | 1827 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| MMDEPOOM_20 | 862 | 1827 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| MMDEPOOM_14 | 38005 | 39930 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.50 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMDEPOOM_38 | 213322 | 214209 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| MMDEPOOM_20 | 862 | 1824 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| MMDEPOOM_14 | 38005 | 39927 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MMDEPOOM_31 | 646 | 1325 | repUS2 | 682 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MMDEPOOM_1 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_2 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_3 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_4 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_5 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_6 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_7 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_8 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_9 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_10 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_11 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_12 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_13 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_14 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_15 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_16 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_17 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_18 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_19 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_20 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_21 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_22 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_23 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_24 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_25 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_27 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_28 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_29 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_30 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_31 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_32 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_33 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_34 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_35 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_36 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_37 | 1.0 | 0.0 | 1.0 |
| MMDEPOOM_38 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_39 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_40 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_41 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_42 | 0.0 | 1.0 | 0.0 |
| MMDEPOOM_43 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MMDEPOOM_7 | 2403 | 12017 | False | Unknown | VOG0982, |
| MMDEPOOM_22 | 15739 | 21550 | True | Siphoviridae | VOG4587, |
Phigaro v2.4.0 (Database: Jan. 2024 release)