Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PEOICLJD_62 | 125569 | 126459 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| PEOICLJD_15 | 38005 | 39930 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| PEOICLJD_26 | 862 | 1827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PEOICLJD_26 | 862 | 1827 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| PEOICLJD_26 | 862 | 1827 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PEOICLJD_26 | 862 | 1827 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PEOICLJD_26 | 862 | 1827 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| PEOICLJD_15 | 38005 | 39930 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.50 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PEOICLJD_62 | 125569 | 126456 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| PEOICLJD_26 | 862 | 1824 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| PEOICLJD_15 | 38005 | 39927 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PEOICLJD_41 | 390 | 1069 | repUS2 | 682 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PEOICLJD_1 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_2 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_3 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_4 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_5 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_6 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_7 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_8 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_9 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_10 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_11 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_12 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_13 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_14 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_15 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_16 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_17 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_18 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_19 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_20 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_21 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_22 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_23 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_24 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_25 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_26 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_27 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_28 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_29 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_30 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_31 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_32 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_33 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_34 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_35 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_37 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_38 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_39 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_40 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_41 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_42 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_43 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_44 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_45 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_46 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_47 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_48 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_49 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_50 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_51 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_52 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_53 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_54 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_55 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_56 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_57 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_58 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_59 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_60 | 1.0 | 0.0 | 1.0 |
| PEOICLJD_61 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_62 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_63 | 0.0 | 1.0 | 0.0 |
| PEOICLJD_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PEOICLJD_8 | 2403 | 12017 | False | Unknown | VOG0982, |
| PEOICLJD_33 | 346559 | 352370 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)