Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MJAFNBFM_50 | 213319 | 214209 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| MJAFNBFM_19 | 44102 | 45067 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| MJAFNBFM_15 | 21932 | 23857 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MJAFNBFM_19 | 44102 | 45067 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| MJAFNBFM_19 | 44102 | 45067 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| MJAFNBFM_19 | 44102 | 45067 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| MJAFNBFM_19 | 44102 | 45067 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| MJAFNBFM_15 | 21932 | 23857 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.50 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MJAFNBFM_50 | 213322 | 214209 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| MJAFNBFM_19 | 44105 | 45067 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| MJAFNBFM_15 | 21932 | 23854 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MJAFNBFM_40 | 1682 | 2361 | repUS2 | 682 / 681 | 98.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MJAFNBFM_1 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_2 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_3 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_4 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_5 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_6 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_7 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_8 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_9 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_10 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_11 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_12 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_13 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_14 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_15 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_16 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_17 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_18 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_19 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_20 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_21 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_22 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_23 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_24 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_25 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_26 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_27 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_28 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_29 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_30 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_31 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_32 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_33 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_34 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_35 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_36 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_37 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_38 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_39 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_40 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_41 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_42 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_43 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_44 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_45 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_46 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_47 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_48 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_49 | 1.0 | 0.0 | 1.0 |
| MJAFNBFM_50 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_51 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_52 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_53 | 0.0 | 1.0 | 0.0 |
| MJAFNBFM_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MJAFNBFM_8 | 2403 | 12017 | False | Unknown | VOG0982, |
| MJAFNBFM_44 | 346560 | 352371 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)