Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJCDOOPK_107 | 12845 | 14818 | tet(Q) | ARO:3000191 | tet(Q) | 97.11 | 100.00 | Z21523.1 |
| PJCDOOPK_172 | 2847 | 3737 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJCDOOPK_107 | 12893 | 14818 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.43 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJCDOOPK_31 | 6439 | 7344 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| PJCDOOPK_172 | 2850 | 3737 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| PJCDOOPK_107 | 12893 | 14815 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJCDOOPK_62 | 2200 | 2780 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJCDOOPK_1 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_2 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_3 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_4 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_5 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_6 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_7 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_8 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_9 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_10 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_11 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_12 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_13 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_14 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_15 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_16 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_17 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_18 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_19 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_20 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_21 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_22 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_23 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_24 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_25 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_26 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_27 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_28 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_29 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_30 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_31 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_32 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_33 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_34 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_35 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_36 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_37 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_38 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_39 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_40 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_41 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_42 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_43 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_44 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_45 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_46 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_47 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_48 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_49 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_50 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_51 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_53 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_54 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_55 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_56 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_57 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_58 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_59 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_60 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_61 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_62 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_63 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_64 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_65 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_66 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_67 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_68 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_69 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_70 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_71 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_72 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_73 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_75 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_76 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_77 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_78 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_79 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_80 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_81 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_82 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_83 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_84 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_85 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_86 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_87 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_88 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_89 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_90 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_91 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_92 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_93 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_94 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_95 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_96 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_98 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_99 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_100 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_101 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_102 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_103 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_104 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_105 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_106 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_107 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_108 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_110 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_111 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_112 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_113 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_114 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_115 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_116 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_117 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_118 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_119 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_120 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_121 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_122 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_123 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_124 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_125 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_126 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_127 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_128 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_129 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_130 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_131 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_132 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_133 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_134 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_135 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_136 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_137 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_138 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_139 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_140 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_142 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_143 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_144 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_145 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_146 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_147 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_148 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_150 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_151 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_152 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_153 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_154 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_155 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_156 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_157 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_158 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_159 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_160 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_161 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_162 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_163 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_164 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_165 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_166 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_167 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_168 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_169 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_170 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_171 | 1.0 | 0.0 | 1.0 |
| PJCDOOPK_172 | 0.0 | 1.0 | 0.0 |
| PJCDOOPK_173 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)