Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCGEPPFE_33 | 216272 | 217162 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| LCGEPPFE_50 | 18580 | 20505 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCGEPPFE_50 | 18580 | 20505 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCGEPPFE_51 | 85549 | 86454 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| LCGEPPFE_33 | 216275 | 217162 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| LCGEPPFE_50 | 18583 | 20505 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCGEPPFE_1 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_2 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_3 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_4 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_5 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_6 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_7 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_8 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_9 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_10 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_11 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_12 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_13 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_14 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_15 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_16 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_17 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_18 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_19 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_20 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_21 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_22 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_23 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_24 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_25 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_26 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_27 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_28 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_29 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_30 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_31 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_32 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_33 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_34 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_35 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_36 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_37 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_38 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_39 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_40 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_41 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_42 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_43 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_44 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_45 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_46 | 1.0 | 0.0 | 1.0 |
| LCGEPPFE_47 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_48 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_49 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_50 | 0.0 | 1.0 | 0.0 |
| LCGEPPFE_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCGEPPFE_33 | 279566 | 282447 | False | Unknown | VOG9702, |
| LCGEPPFE_47 | 6496 | 20318 | True | Unknown | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)