Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMIPLOBE_90 | 217965 | 219890 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| HMIPLOBE_90 | 203619 | 204419 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| HMIPLOBE_35 | 104488 | 105378 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| HMIPLOBE_10 | 63007 | 64932 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HMIPLOBE_10 | 63007 | 64932 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HMIPLOBE_90 | 203619 | 204419 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| HMIPLOBE_10 | 12437 | 13387 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMIPLOBE_35 | 104488 | 105375 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| HMIPLOBE_10 | 63007 | 64929 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HMIPLOBE_90 | 203619 | 204416 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| HMIPLOBE_90 | 217965 | 219887 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| HMIPLOBE_10 | 12436 | 13389 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HMIPLOBE_64 | 1595 | 2175 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMIPLOBE_1 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_2 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_3 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_4 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_5 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_6 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_7 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_8 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_9 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_10 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_11 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_12 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_13 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_14 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_15 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_16 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_17 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_18 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_19 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_20 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_21 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_22 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_23 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_24 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_25 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_26 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_27 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_28 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_29 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_30 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_31 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_32 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_33 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_34 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_35 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_36 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_37 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_38 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_39 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_40 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_41 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_42 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_43 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_44 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_45 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_46 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_47 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_48 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_49 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_50 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_51 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_52 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_53 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_54 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_55 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_56 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_57 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_58 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_59 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_60 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_61 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_62 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_63 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_64 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_65 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_66 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_67 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_68 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_70 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_71 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_72 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_73 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_74 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_75 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_76 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_77 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_78 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_79 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_80 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_81 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_82 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_83 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_84 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_85 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_86 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_88 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_89 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_90 | 0.0 | 1.0 | 0.0 |
| HMIPLOBE_91 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_92 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_93 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_94 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_95 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_96 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_97 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_99 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_100 | 1.0 | 0.0 | 1.0 |
| HMIPLOBE_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMIPLOBE_8 | 44122 | 58366 | False | Unknown | VOG3992, |
| HMIPLOBE_15 | 30543 | 40071 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)