Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLIHOBAM_33 | 602463 | 603263 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| LLIHOBAM_33 | 586992 | 588917 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| LLIHOBAM_44 | 104488 | 105378 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| LLIHOBAM_9 | 63007 | 64932 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LLIHOBAM_9 | 63007 | 64932 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LLIHOBAM_33 | 602463 | 603263 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| LLIHOBAM_9 | 12437 | 13387 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLIHOBAM_44 | 104488 | 105375 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| LLIHOBAM_9 | 63007 | 64929 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LLIHOBAM_33 | 602466 | 603263 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| LLIHOBAM_33 | 586995 | 588917 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| LLIHOBAM_9 | 12436 | 13389 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LLIHOBAM_46 | 146 | 825 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLIHOBAM_1 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_2 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_3 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_4 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_5 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_6 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_7 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_8 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_9 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_10 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_11 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_12 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_13 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_14 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_15 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_16 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_17 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_18 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_19 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_20 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_21 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_22 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_23 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_24 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_25 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_26 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_27 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_28 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_29 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_30 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_31 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_32 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_33 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_34 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_35 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_36 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_37 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_38 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_40 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_41 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_42 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_43 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_44 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_45 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_46 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_47 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_48 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_49 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_50 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_51 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_52 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_53 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_54 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_55 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_56 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_57 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_58 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_59 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_60 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_61 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_62 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_63 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_64 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_65 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_66 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_67 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_68 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_69 | 1.0 | 0.0 | 1.0 |
| LLIHOBAM_70 | 0.0 | 1.0 | 0.0 |
| LLIHOBAM_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLIHOBAM_7 | 44122 | 58366 | False | Unknown | VOG3992, |
| LLIHOBAM_12 | 32130 | 41658 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)