Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAPDECAP_22 | 601120 | 601920 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| JAPDECAP_22 | 585649 | 587574 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| JAPDECAP_68 | 104488 | 105378 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JAPDECAP_19 | 63007 | 64932 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JAPDECAP_19 | 63007 | 64932 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JAPDECAP_22 | 601120 | 601920 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| JAPDECAP_19 | 12437 | 13387 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAPDECAP_68 | 104488 | 105375 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JAPDECAP_19 | 63007 | 64929 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JAPDECAP_22 | 601123 | 601920 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| JAPDECAP_22 | 585652 | 587574 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| JAPDECAP_19 | 12436 | 13389 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JAPDECAP_66 | 2268 | 2827 | repUS2 | 561 / 681 | 98.22 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAPDECAP_1 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_2 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_3 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_4 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_5 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_6 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_7 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_8 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_9 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_10 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_11 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_12 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_13 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_14 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_15 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_16 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_17 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_18 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_19 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_20 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_21 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_22 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_23 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_24 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_25 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_26 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_27 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_28 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_29 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_30 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_31 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_32 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_33 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_34 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_35 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_36 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_37 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_38 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_39 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_40 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_41 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_42 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_43 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_44 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_45 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_46 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_47 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_48 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_49 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_50 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_51 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_52 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_53 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_54 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_55 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_56 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_57 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_58 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_59 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_60 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_61 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_62 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_63 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_64 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_65 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_66 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_67 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_68 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_69 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_70 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_71 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_72 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_73 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_74 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_75 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_76 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_77 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_78 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_79 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_80 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_81 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_82 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_83 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_84 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_85 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_86 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_87 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_88 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_89 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_90 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_91 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_92 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_93 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_94 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_95 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_96 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_97 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_98 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_99 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_100 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_101 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_102 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_103 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_104 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_105 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_106 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_107 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_108 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_109 | 0.0 | 1.0 | 0.0 |
| JAPDECAP_110 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_111 | 1.0 | 0.0 | 1.0 |
| JAPDECAP_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAPDECAP_17 | 16856 | 31100 | False | Unknown | VOG4572, |
| JAPDECAP_24 | 30543 | 40071 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)