Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIKGLKHI_36 | 575881 | 576681 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| GIKGLKHI_36 | 573669 | 575594 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| GIKGLKHI_59 | 104488 | 105378 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| GIKGLKHI_34 | 63007 | 64932 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIKGLKHI_34 | 63007 | 64932 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GIKGLKHI_36 | 575881 | 576681 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| GIKGLKHI_34 | 18593 | 19543 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIKGLKHI_59 | 104488 | 105375 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| GIKGLKHI_34 | 63007 | 64929 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GIKGLKHI_36 | 575884 | 576681 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GIKGLKHI_36 | 573672 | 575594 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| GIKGLKHI_34 | 18592 | 19545 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GIKGLKHI_76 | 1591 | 2270 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIKGLKHI_1 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_2 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_3 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_4 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_5 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_7 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_8 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_9 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_10 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_11 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_12 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_13 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_14 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_15 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_16 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_17 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_18 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_19 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_20 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_21 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_22 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_23 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_24 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_25 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_26 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_27 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_28 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_29 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_30 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_31 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_32 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_33 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_34 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_35 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_36 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_37 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_38 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_39 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_40 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_41 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_42 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_43 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_44 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_45 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_46 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_47 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_48 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_49 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_50 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_51 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_52 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_53 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_54 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_55 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_56 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_57 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_58 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_59 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_60 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_61 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_62 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_63 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_64 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_65 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_66 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_68 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_69 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_70 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_71 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_72 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_73 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_74 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_75 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_76 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_77 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_78 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_79 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_80 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_81 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_82 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_83 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_84 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_85 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_86 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_87 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_88 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_89 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_90 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_91 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_92 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_93 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_94 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_95 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_96 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_97 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_98 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_99 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_100 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_101 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_103 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_104 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_105 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_106 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_107 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_108 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_109 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_110 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_111 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_112 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_113 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_114 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_115 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_116 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_117 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_118 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_119 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_120 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_121 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_122 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_123 | 0.0 | 1.0 | 0.0 |
| GIKGLKHI_124 | 1.0 | 0.0 | 1.0 |
| GIKGLKHI_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIKGLKHI_11 | 140005 | 149202 | False | Unknown | VOG3992, |
| GIKGLKHI_114 | 30543 | 40071 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)