Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCDIADEL_92 | 111545 | 113470 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CCDIADEL_55 | 85680 | 86588 | CblA-1 | ARO:3002999 | CblA-1 | 97.97 | 102.03 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CCDIADEL_92 | 111545 | 113470 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CCDIADEL_14 | 13482 | 14432 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| CCDIADEL_14 | 13482 | 14432 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| CCDIADEL_14 | 13482 | 14432 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| CCDIADEL_14 | 13482 | 14432 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCDIADEL_92 | 111545 | 113467 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CCDIADEL_55 | 85680 | 86567 | cblA | CblA family class A beta-lactamase | BLASTX | 97.97 | 100.00 | WP_005827792.1 |
| CCDIADEL_14 | 13481 | 14434 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CCDIADEL_89 | 1742 | 2421 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCDIADEL_1 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_2 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_3 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_4 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_5 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_6 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_7 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_8 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_9 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_10 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_11 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_12 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_13 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_14 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_15 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_16 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_17 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_18 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_19 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_20 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_21 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_22 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_23 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_24 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_25 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_26 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_27 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_28 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_29 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_30 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_31 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_32 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_33 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_34 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_35 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_36 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_37 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_38 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_39 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_40 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_41 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_42 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_43 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_44 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_45 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_46 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_47 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_48 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_49 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_50 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_51 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_52 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_53 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_54 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_55 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_56 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_57 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_58 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_59 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_60 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_61 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_62 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_63 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_64 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_65 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_66 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_67 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_68 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_69 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_70 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_71 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_72 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_73 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_74 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_75 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_76 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_77 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_78 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_79 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_80 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_81 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_82 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_83 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_84 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_85 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_86 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_87 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_88 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_89 | 1.0 | 0.0 | 1.0 |
| CCDIADEL_90 | 0.0 | 1.0 | 0.0 |
| CCDIADEL_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCDIADEL_10 | 24848 | 38514 | False | Unknown | VOG0083, |
| CCDIADEL_13 | 64880 | 72246 | False | Siphoviridae | VOG1326, |
Phigaro v2.4.0 (Database: Jan. 2024 release)