Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MILNIFJN_55 | 25002 | 25892 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MILNIFJN_22 | 262900 | 263850 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MILNIFJN_55 | 25002 | 25889 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| MILNIFJN_22 | 262899 | 263852 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MILNIFJN_48 | 1742 | 2421 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MILNIFJN_1 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_2 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_3 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_4 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_5 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_6 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_7 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_8 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_9 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_10 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_11 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_12 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_13 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_14 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_15 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_16 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_17 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_18 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_19 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_20 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_21 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_22 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_23 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_24 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_25 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_26 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_27 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_28 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_29 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_30 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_31 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_32 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_33 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_34 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_35 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_36 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_37 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_38 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_39 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_40 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_41 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_42 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_43 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_44 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_45 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_46 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_47 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_48 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_49 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_50 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_51 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_52 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_53 | 1.0 | 0.0 | 1.0 |
| MILNIFJN_54 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_55 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_56 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_57 | 0.0 | 1.0 | 0.0 |
| MILNIFJN_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MILNIFJN_22 | 106168 | 117448 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)