Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHDEFEDF_44 | 217609 | 218499 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHDEFEDF_44 | 217612 | 218499 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHDEFEDF_51 | 2014 | 2693 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHDEFEDF_1 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_2 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_3 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_4 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_5 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_6 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_7 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_8 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_9 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_10 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_11 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_12 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_13 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_14 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_15 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_16 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_17 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_18 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_19 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_20 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_21 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_22 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_23 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_24 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_25 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_26 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_27 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_28 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_29 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_30 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_31 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_32 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_33 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_34 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_35 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_36 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_37 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_38 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_39 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_40 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_41 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_42 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_43 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_44 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_45 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_46 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_47 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_48 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_49 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_50 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_51 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_52 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_53 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_54 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_55 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_56 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_57 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_58 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_59 | 1.0 | 0.0 | 1.0 |
| CHDEFEDF_60 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_61 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_62 | 0.0 | 1.0 | 0.0 |
| CHDEFEDF_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHDEFEDF_23 | 20895 | 34018 | False | Unknown | VOG0083, |
Phigaro v2.4.0 (Database: Jan. 2024 release)