Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFJJFKJJ_75 | 166423 | 167313 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 110.47 | GQ343019.1 |
| EFJJFKJJ_17 | 64713 | 66638 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| EFJJFKJJ_48 | 4095 | 4829 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFJJFKJJ_48 | 4095 | 4829 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| EFJJFKJJ_17 | 64713 | 66638 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.70 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFJJFKJJ_75 | 166426 | 167313 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| EFJJFKJJ_48 | 4095 | 4826 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| EFJJFKJJ_17 | 64716 | 66638 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFJJFKJJ_65 | 1032 | 1711 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFJJFKJJ_1 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_2 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_3 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_4 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_5 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_6 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_7 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_8 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_9 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_10 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_11 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_12 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_13 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_14 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_15 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_16 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_17 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_18 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_19 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_20 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_21 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_22 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_23 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_24 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_25 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_26 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_27 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_28 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_29 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_30 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_31 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_32 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_33 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_34 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_35 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_36 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_37 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_38 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_39 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_40 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_41 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_42 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_43 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_44 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_45 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_46 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_47 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_48 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_49 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_50 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_51 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_52 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_53 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_54 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_55 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_56 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_57 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_58 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_59 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_60 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_61 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_62 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_63 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_64 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_65 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_66 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_67 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_68 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_69 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_70 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_71 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_72 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_73 | 1.0 | 0.0 | 1.0 |
| EFJJFKJJ_74 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_75 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_76 | 0.0 | 1.0 | 0.0 |
| EFJJFKJJ_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFJJFKJJ_5 | 78185 | 89951 | False | Unknown | VOG4690, |
| EFJJFKJJ_18 | 84286 | 96166 | False | Siphoviridae | VOG0749, |
| EFJJFKJJ_55 | 21100 | 26106 | False | Siphoviridae | VOG4567, |
Phigaro v2.4.0 (Database: Jan. 2024 release)