Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFGINGHK_21 | 64713 | 66638 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| EFGINGHK_51 | 6621 | 7355 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| EFGINGHK_66 | 95 | 985 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 110.47 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFGINGHK_51 | 6621 | 7355 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| EFGINGHK_21 | 64713 | 66638 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.70 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFGINGHK_66 | 95 | 982 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| EFGINGHK_51 | 6624 | 7355 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| EFGINGHK_21 | 64716 | 66638 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFGINGHK_56 | 6111 | 6264 | Col156 | 154 / 154 | 95.45 | NC009781 |
| EFGINGHK_69 | 271 | 523 | Col(MG828) | 253 / 262 | 92.89 | NC008486 |
| EFGINGHK_75 | 1065 | 1184 | ColRNAI | 121 / 130 | 89.26 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFGINGHK_1 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_2 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_3 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_4 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_5 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_6 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_7 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_8 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_9 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_10 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_11 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_12 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_13 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_14 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_15 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_16 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_17 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_18 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_19 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_20 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_21 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_22 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_23 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_24 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_25 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_26 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_27 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_28 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_29 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_30 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_31 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_32 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_33 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_34 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_35 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_36 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_37 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_38 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_39 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_40 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_41 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_42 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_43 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_44 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_45 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_46 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_47 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_48 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_49 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_50 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_51 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_52 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_53 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_54 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_55 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_56 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_57 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_58 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_59 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_60 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_61 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_62 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_63 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_64 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_65 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_66 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_67 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_68 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_69 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_70 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_71 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_72 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_73 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_74 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_75 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_76 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_77 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_78 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_79 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_80 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_81 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_82 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_83 | 1.0 | 0.0 | 1.0 |
| EFGINGHK_84 | 0.0 | 1.0 | 0.0 |
| EFGINGHK_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFGINGHK_6 | 12578 | 23153 | False | Unknown | VOG3992, |
| EFGINGHK_44 | 167794 | 172800 | False | Siphoviridae | VOG2788, |
| EFGINGHK_77 | 78185 | 89951 | False | Unknown | VOG4690, |
Phigaro v2.4.0 (Database: Jan. 2024 release)