Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPCPAPBA_55 | 6621 | 7355 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| FPCPAPBA_12 | 224 | 2149 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| FPCPAPBA_4 | 95 | 985 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 110.47 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FPCPAPBA_55 | 6621 | 7355 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| FPCPAPBA_12 | 224 | 2149 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.70 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPCPAPBA_4 | 95 | 982 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| FPCPAPBA_55 | 6624 | 7355 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| FPCPAPBA_12 | 224 | 2146 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FPCPAPBA_58 | 1248 | 1449 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FPCPAPBA_1 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_2 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_3 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_4 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_5 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_6 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_7 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_8 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_9 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_10 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_11 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_12 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_13 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_14 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_15 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_16 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_17 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_18 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_19 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_20 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_21 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_22 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_23 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_24 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_25 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_26 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_27 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_28 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_29 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_30 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_31 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_32 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_33 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_34 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_35 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_36 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_37 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_38 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_39 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_40 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_41 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_42 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_43 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_44 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_45 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_46 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_47 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_48 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_49 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_50 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_51 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_52 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_53 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_54 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_55 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_56 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_57 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_58 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_59 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_60 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_61 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_62 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_63 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_64 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_65 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_66 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_67 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_68 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_69 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_70 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_71 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_72 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_73 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_74 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_75 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_76 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_77 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_78 | 1.0 | 0.0 | 1.0 |
| FPCPAPBA_79 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_80 | 0.0 | 1.0 | 0.0 |
| FPCPAPBA_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FPCPAPBA_11 | 351369 | 363135 | False | Siphoviridae | VOG0749, |
| FPCPAPBA_66 | 167794 | 172800 | False | Siphoviridae | VOG2788, |
| FPCPAPBA_77 | 84622 | 96097 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)