Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IENILIDO_41 | 206838 | 208763 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| IENILIDO_24 | 8235 | 9200 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| IENILIDO_26 | 1808 | 2608 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IENILIDO_24 | 8235 | 9200 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| IENILIDO_24 | 8235 | 9200 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| IENILIDO_24 | 8235 | 9200 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| IENILIDO_24 | 8235 | 9200 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| IENILIDO_41 | 206838 | 208763 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| IENILIDO_26 | 1808 | 2608 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IENILIDO_24 | 8238 | 9200 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| IENILIDO_41 | 206838 | 208760 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| IENILIDO_26 | 1808 | 2605 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IENILIDO_9 | 43232 | 44812 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IENILIDO_31 | 1740 | 2419 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IENILIDO_1 | 0.0 | 1.0 | 0.0 |
| IENILIDO_2 | 0.0 | 1.0 | 0.0 |
| IENILIDO_3 | 0.0 | 1.0 | 0.0 |
| IENILIDO_4 | 0.0 | 1.0 | 0.0 |
| IENILIDO_5 | 0.0 | 1.0 | 0.0 |
| IENILIDO_6 | 0.0 | 1.0 | 0.0 |
| IENILIDO_7 | 0.0 | 1.0 | 0.0 |
| IENILIDO_8 | 0.0 | 1.0 | 0.0 |
| IENILIDO_9 | 0.0 | 1.0 | 0.0 |
| IENILIDO_10 | 0.0 | 1.0 | 0.0 |
| IENILIDO_11 | 0.0 | 1.0 | 0.0 |
| IENILIDO_12 | 0.0 | 1.0 | 0.0 |
| IENILIDO_13 | 0.0 | 1.0 | 0.0 |
| IENILIDO_14 | 0.0 | 1.0 | 0.0 |
| IENILIDO_15 | 1.0 | 0.0 | 1.0 |
| IENILIDO_16 | 0.0 | 1.0 | 0.0 |
| IENILIDO_17 | 0.0 | 1.0 | 0.0 |
| IENILIDO_18 | 0.0 | 1.0 | 0.0 |
| IENILIDO_19 | 1.0 | 0.0 | 1.0 |
| IENILIDO_20 | 1.0 | 0.0 | 1.0 |
| IENILIDO_21 | 0.0 | 1.0 | 0.0 |
| IENILIDO_22 | 0.0 | 1.0 | 0.0 |
| IENILIDO_23 | 1.0 | 0.0 | 1.0 |
| IENILIDO_24 | 0.0 | 1.0 | 0.0 |
| IENILIDO_25 | 1.0 | 0.0 | 1.0 |
| IENILIDO_26 | 1.0 | 0.0 | 1.0 |
| IENILIDO_27 | 0.0 | 1.0 | 0.0 |
| IENILIDO_29 | 1.0 | 0.0 | 1.0 |
| IENILIDO_30 | 1.0 | 0.0 | 1.0 |
| IENILIDO_31 | 1.0 | 0.0 | 1.0 |
| IENILIDO_32 | 0.0 | 1.0 | 0.0 |
| IENILIDO_33 | 0.0 | 1.0 | 0.0 |
| IENILIDO_34 | 0.0 | 1.0 | 0.0 |
| IENILIDO_41 | 0.0 | 1.0 | 0.0 |
| IENILIDO_50 | 0.0 | 1.0 | 0.0 |
| IENILIDO_59 | 0.0 | 1.0 | 0.0 |
| IENILIDO_60 | 0.0 | 1.0 | 0.0 |
| IENILIDO_61 | 0.0 | 1.0 | 0.0 |
| IENILIDO_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IENILIDO_1 | 132282 | 140457 | True | Siphoviridae | VOG0275, |
| IENILIDO_59 | 38946 | 43166 | False | Myoviridae | VOG1353, |
Phigaro v2.4.0 (Database: Jan. 2024 release)