Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OINGKCMD_3 | 416243 | 419569 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
| OINGKCMD_2 | 38172 | 41855 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OINGKCMD_2 | 81495 | 83415 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OINGKCMD_2 | 81498 | 82709 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 98.27 | 63.22 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OINGKCMD_1 | 1.0 | 0.0 | 1.0 |
| OINGKCMD_2 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_3 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_4 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_5 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_6 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_7 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_8 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_9 | 0.0 | 1.0 | 0.0 |
| OINGKCMD_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OINGKCMD_3 | 63278 | 76489 | False | Siphoviridae | VOG7581, VOG0275, VOG9502, VOG0641, VOG9569, VOG5793, VOG7634, VOG5589, VOG5587, VOG4568, VOG4556, VOG4544 |
| OINGKCMD_4 | 123813 | 153229 | False | Siphoviridae | VOG0992, VOG0136, VOG0991, VOG6914, VOG3578, VOG4599, VOG4605, VOG5793, VOG5601, VOG1581, VOG0880, VOG4553, VOG4576, VOG0720, VOG5101, VOG2560, VOG9852, VOG4841, VOG0376, VOG2545, VOG2038, VOG2538, VOG0943, VOG5782, VOG9343 |
| OINGKCMD_4 | 158655 | 163751 | False | Myoviridae / Siphoviridae | VOG5277, VOG4602, VOG3594 |
| OINGKCMD_5 | 104887 | 127579 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384, VOG2484 |
| OINGKCMD_5 | 195623 | 203308 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| OINGKCMD_7 | 173526 | 188897 | True | Unknown | VOG0944, VOG0275, VOG0275, VOG0275, VOG1837, VOG2090, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)