Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFEPMIAA_55 | 345856 | 346590 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| LFEPMIAA_94 | 34092 | 36065 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LFEPMIAA_94 | 34092 | 36017 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LFEPMIAA_55 | 345856 | 346590 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| LFEPMIAA_55 | 347362 | 348825 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| LFEPMIAA_55 | 348951 | 350165 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFEPMIAA_55 | 345859 | 346590 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| LFEPMIAA_94 | 34095 | 36017 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LFEPMIAA_55 | 347365 | 348825 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| LFEPMIAA_55 | 348942 | 350165 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LFEPMIAA_68 | 2014 | 2693 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFEPMIAA_1 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_2 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_3 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_4 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_5 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_6 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_7 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_8 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_9 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_10 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_11 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_12 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_13 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_14 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_15 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_16 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_17 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_18 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_19 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_20 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_21 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_22 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_23 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_24 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_25 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_26 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_27 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_28 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_29 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_30 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_31 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_32 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_33 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_34 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_35 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_36 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_37 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_38 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_39 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_40 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_41 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_42 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_43 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_44 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_45 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_46 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_47 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_48 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_49 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_50 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_51 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_52 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_53 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_54 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_55 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_56 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_57 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_58 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_59 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_60 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_61 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_62 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_63 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_64 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_65 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_66 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_67 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_68 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_69 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_70 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_71 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_72 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_73 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_74 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_75 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_76 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_77 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_79 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_80 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_81 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_82 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_83 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_84 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_85 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_86 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_87 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_88 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_89 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_90 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_91 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_92 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_93 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_94 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_95 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_96 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_97 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_98 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_99 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_100 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_101 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_102 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_103 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_104 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_105 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_106 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_107 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_108 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_109 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_110 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_111 | 0.0 | 1.0 | 0.0 |
| LFEPMIAA_112 | 1.0 | 0.0 | 1.0 |
| LFEPMIAA_113 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFEPMIAA_56 | 33298 | 42438 | False | Unknown | VOG4573, |
| LFEPMIAA_73 | 88974 | 96459 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)