Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 1 | 0 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOEBGAJG_109 | 85800 | 86534 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| HOEBGAJG_100 | 34092 | 36065 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HOEBGAJG_100 | 34092 | 36017 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HOEBGAJG_109 | 85800 | 86534 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| HOEBGAJG_109 | 87306 | 88769 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| HOEBGAJG_109 | 88895 | 90109 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
| HOEBGAJG_8 | 1043 | 1794 | cfxA6 | Unknown Beta-lactam | 86.45 | 75.40 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOEBGAJG_109 | 85803 | 86534 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| HOEBGAJG_100 | 34095 | 36017 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HOEBGAJG_109 | 87309 | 88769 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| HOEBGAJG_109 | 88886 | 90109 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HOEBGAJG_38 | 303 | 1758 | ECSMS35_RS25765 | 0.0 | Colicin E1 | Exotoxin | 94.92 | 92.91 | WP_000447001 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOEBGAJG_38 | 303 | 1505 | virulence_ecoli | cea | Colicin E1 | 99.92 | 100.00 | CYCO01000082 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HOEBGAJG_25 | 1452 | 2131 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
| HOEBGAJG_12 | 409 | 562 | Col156 | 154 / 154 | 94.81 | NC009781 |
| HOEBGAJG_17 | 993 | 1194 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
| HOEBGAJG_45 | 945 | 1075 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOEBGAJG_1 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_2 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_3 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_4 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_5 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_6 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_7 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_8 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_9 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_10 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_11 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_12 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_13 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_14 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_15 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_16 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_17 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_18 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_19 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_20 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_21 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_22 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_23 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_24 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_25 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_26 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_27 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_28 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_29 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_30 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_31 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_32 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_33 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_34 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_35 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_36 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_37 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_38 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_39 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_40 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_41 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_42 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_43 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_44 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_45 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_46 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_47 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_48 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_49 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_50 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_51 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_52 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_53 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_54 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_55 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_56 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_57 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_58 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_59 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_60 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_61 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_62 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_63 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_64 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_65 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_66 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_67 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_68 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_69 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_70 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_71 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_72 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_73 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_74 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_75 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_76 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_77 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_78 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_79 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_80 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_81 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_82 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_83 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_84 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_85 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_86 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_87 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_88 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_89 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_90 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_91 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_92 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_93 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_94 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_95 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_96 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_97 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_98 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_99 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_100 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_101 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_102 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_103 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_104 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_105 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_106 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_107 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_108 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_109 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_110 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_111 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_112 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_113 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_114 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_115 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_116 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_117 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_118 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_119 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_120 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_121 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_122 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_123 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_124 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_125 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_126 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_127 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_128 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_129 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_130 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_131 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_132 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_133 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_134 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_135 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_136 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_137 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_138 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_139 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_140 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_141 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_142 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_143 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_144 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_145 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_146 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_147 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_148 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_149 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_150 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_151 | 0.0 | 1.0 | 0.0 |
| HOEBGAJG_152 | 1.0 | 0.0 | 1.0 |
| HOEBGAJG_153 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOEBGAJG_74 | 31712 | 42087 | False | Siphoviridae | VOG0749, |
| HOEBGAJG_98 | 88721 | 96206 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)