Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPNKMKIH_69 | 345856 | 346590 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| KPNKMKIH_78 | 34092 | 36065 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KPNKMKIH_78 | 34092 | 36017 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KPNKMKIH_69 | 345856 | 346590 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| KPNKMKIH_69 | 347362 | 348825 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| KPNKMKIH_69 | 348951 | 350165 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPNKMKIH_69 | 345859 | 346590 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| KPNKMKIH_78 | 34095 | 36017 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KPNKMKIH_69 | 347365 | 348825 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| KPNKMKIH_69 | 348942 | 350165 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KPNKMKIH_27 | 146 | 726 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPNKMKIH_1 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_3 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_4 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_5 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_6 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_7 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_8 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_9 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_10 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_11 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_12 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_13 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_14 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_15 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_16 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_18 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_19 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_20 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_21 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_22 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_23 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_24 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_26 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_27 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_28 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_29 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_30 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_31 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_32 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_33 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_34 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_36 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_37 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_38 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_39 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_40 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_41 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_42 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_43 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_44 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_45 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_46 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_47 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_48 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_49 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_50 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_51 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_52 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_53 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_54 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_55 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_56 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_57 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_58 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_59 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_60 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_61 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_62 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_63 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_64 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_65 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_66 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_67 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_68 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_69 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_70 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_71 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_72 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_73 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_74 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_75 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_76 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_77 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_78 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_79 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_80 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_81 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_82 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_83 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_84 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_85 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_86 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_87 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_88 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_89 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_90 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_91 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_92 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_93 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_94 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_95 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_96 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_97 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_98 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_99 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_100 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_101 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_102 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_103 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_104 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_105 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_106 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_107 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_108 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_109 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_110 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_111 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_112 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_113 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_114 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_115 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_116 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_117 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_118 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_119 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_120 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_121 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_122 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_123 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_124 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_125 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_126 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_127 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_128 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_129 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_130 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_131 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_132 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_133 | 1.0 | 0.0 | 1.0 |
| KPNKMKIH_134 | 0.0 | 1.0 | 0.0 |
| KPNKMKIH_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPNKMKIH_29 | 6922 | 8695 | False | Siphoviridae | VOG2703 |
| KPNKMKIH_54 | 32114 | 42489 | False | Siphoviridae | VOG0749, |
| KPNKMKIH_80 | 88501 | 95986 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)