Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 3 | 1 | 6.78 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEKEEBPK_126 | 34092 | 36065 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| GEKEEBPK_97 | 10994 | 11728 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| GEKEEBPK_59 | 332 | 1225 | leuO | ARO:3003843 | leuO | 99.33 | 94.59 | LR730402.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GEKEEBPK_126 | 34092 | 36017 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GEKEEBPK_97 | 10994 | 11728 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| GEKEEBPK_97 | 8759 | 10222 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| GEKEEBPK_97 | 7419 | 8633 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
| GEKEEBPK_4 | 1514 | 2265 | cfxA6 | Unknown Beta-lactam | 86.45 | 75.40 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEKEEBPK_97 | 10994 | 11725 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| GEKEEBPK_126 | 34095 | 36017 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GEKEEBPK_97 | 8759 | 10219 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| GEKEEBPK_97 | 7419 | 8642 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GEKEEBPK_9 | 519 | 2084 | ECSMS35_RS25765 | 0.0 | Colicin E1 | Exotoxin | 95.21 | 99.94 | WP_000447001 |
| GEKEEBPK_79 | 138 | 449 | sat | 6.70e-105 | Sat | Effector delivery system | 88.64 | 98.73 | - |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GEKEEBPK_9 | 519 | 1721 | virulence_ecoli | cea | Colicin E1 | 99.92 | 100.00 | CYCO01000082 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GEKEEBPK_63 | 402 | 1127 | artP | 1.65e-162 | arginine ABC transporter, ATP-binding protein | 96.69 | 100.00 | CBG87650 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GEKEEBPK_57 | 409 | 1088 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
| GEKEEBPK_8 | 4466 | 4619 | Col156 | 154 / 154 | 94.81 | NC009781 |
| GEKEEBPK_15 | 3447 | 3648 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
| GEKEEBPK_9 | 4755 | 4885 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GEKEEBPK_1 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_2 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_3 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_4 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_5 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_6 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_7 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_8 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_9 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_10 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_11 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_12 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_13 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_14 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_15 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_16 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_17 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_18 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_19 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_20 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_21 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_22 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_23 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_24 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_25 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_26 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_27 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_28 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_29 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_30 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_31 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_32 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_33 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_34 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_35 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_36 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_37 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_38 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_39 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_40 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_41 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_42 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_43 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_44 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_45 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_46 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_48 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_49 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_50 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_51 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_52 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_53 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_54 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_55 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_56 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_57 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_58 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_59 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_60 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_61 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_62 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_63 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_64 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_65 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_66 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_67 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_68 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_69 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_70 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_71 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_72 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_73 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_74 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_75 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_76 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_77 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_78 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_79 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_80 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_81 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_82 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_83 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_84 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_85 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_86 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_87 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_88 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_89 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_90 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_91 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_92 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_93 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_94 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_95 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_96 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_97 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_98 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_99 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_100 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_101 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_102 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_103 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_104 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_105 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_106 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_107 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_108 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_109 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_110 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_111 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_112 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_113 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_114 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_115 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_116 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_117 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_118 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_119 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_120 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_121 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_122 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_123 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_124 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_125 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_126 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_127 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_128 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_129 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_130 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_131 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_132 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_133 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_134 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_135 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_136 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_137 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_138 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_139 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_140 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_141 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_142 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_143 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_144 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_145 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_146 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_147 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_148 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_149 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_150 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_151 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_152 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_153 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_154 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_155 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_156 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_157 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_158 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_159 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_160 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_161 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_162 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_163 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_164 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_165 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_166 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_167 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_168 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_169 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_170 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_171 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_172 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_173 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_174 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_175 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_176 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_177 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_178 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_179 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_180 | 0.0 | 1.0 | 0.0 |
| GEKEEBPK_181 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_182 | 1.0 | 0.0 | 1.0 |
| GEKEEBPK_183 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GEKEEBPK_106 | 28022 | 38397 | False | Unknown | VOG3992, |
| GEKEEBPK_128 | 88670 | 96155 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)