Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHECEPKP_58 | 85800 | 86534 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| NHECEPKP_93 | 34092 | 36065 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHECEPKP_93 | 34092 | 36017 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NHECEPKP_58 | 85800 | 86534 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| NHECEPKP_58 | 87306 | 88769 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| NHECEPKP_58 | 88895 | 90109 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHECEPKP_84 | 81 | 986 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| NHECEPKP_58 | 85803 | 86534 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| NHECEPKP_93 | 34095 | 36017 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NHECEPKP_58 | 87309 | 88769 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| NHECEPKP_58 | 88886 | 90109 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NHECEPKP_30 | 385 | 1064 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
| NHECEPKP_14 | 3753 | 3906 | Col156 | 154 / 154 | 94.81 | NC009781 |
| NHECEPKP_19 | 485 | 686 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHECEPKP_1 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_2 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_3 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_4 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_5 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_6 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_7 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_8 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_9 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_10 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_11 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_12 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_13 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_14 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_15 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_16 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_17 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_18 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_19 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_20 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_21 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_22 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_23 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_24 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_25 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_26 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_27 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_28 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_29 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_30 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_31 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_32 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_33 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_34 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_35 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_36 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_37 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_38 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_39 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_40 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_41 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_42 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_43 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_44 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_45 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_46 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_47 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_48 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_49 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_50 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_52 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_53 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_54 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_55 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_56 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_57 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_58 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_59 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_60 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_61 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_62 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_63 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_64 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_65 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_66 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_67 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_68 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_69 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_70 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_71 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_72 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_73 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_74 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_75 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_76 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_77 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_78 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_79 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_80 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_81 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_82 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_83 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_84 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_85 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_86 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_87 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_88 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_89 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_90 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_91 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_92 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_93 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_94 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_95 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_96 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_97 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_98 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_99 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_100 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_101 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_102 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_103 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_104 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_105 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_106 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_107 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_108 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_109 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_110 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_111 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_112 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_113 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_114 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_115 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_116 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_117 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_118 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_119 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_120 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_121 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_122 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_123 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_124 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_125 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_126 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_127 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_128 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_129 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_130 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_131 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_132 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_133 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_134 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_135 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_136 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_137 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_138 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_139 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_140 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_141 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_142 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_143 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_144 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_145 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_146 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_147 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_148 | 1.0 | 0.0 | 1.0 |
| NHECEPKP_149 | 0.0 | 1.0 | 0.0 |
| NHECEPKP_150 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NHECEPKP_61 | 88500 | 95985 | False | Siphoviridae | VOG0204, |
| NHECEPKP_82 | 31712 | 42087 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)