Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBDDACGI_137 | 43824 | 44624 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| PBDDACGI_137 | 42379 | 43518 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| PBDDACGI_137 | 41044 | 42180 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| PBDDACGI_137 | 40005 | 40868 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBDDACGI_137 | 43824 | 44624 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| PBDDACGI_137 | 41044 | 42210 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBDDACGI_137 | 40008 | 40868 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| PBDDACGI_137 | 41047 | 42210 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| PBDDACGI_137 | 42382 | 43518 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| PBDDACGI_137 | 43824 | 44621 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBDDACGI_1 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_2 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_3 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_4 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_5 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_6 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_7 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_8 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_9 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_10 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_11 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_12 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_13 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_14 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_15 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_16 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_17 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_18 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_19 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_20 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_21 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_22 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_23 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_24 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_25 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_26 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_27 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_28 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_29 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_30 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_31 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_32 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_33 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_34 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_35 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_36 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_37 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_38 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_39 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_40 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_41 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_42 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_43 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_44 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_45 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_46 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_47 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_48 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_49 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_50 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_51 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_52 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_53 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_54 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_55 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_56 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_58 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_59 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_60 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_61 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_62 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_63 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_64 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_65 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_66 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_67 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_68 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_69 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_70 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_71 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_72 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_73 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_74 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_75 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_77 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_78 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_79 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_81 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_82 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_83 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_84 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_85 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_86 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_87 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_88 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_89 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_90 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_93 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_94 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_95 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_96 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_97 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_98 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_99 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_100 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_101 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_102 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_103 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_104 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_105 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_106 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_107 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_108 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_109 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_110 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_111 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_112 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_113 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_114 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_115 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_116 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_117 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_118 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_119 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_120 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_121 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_122 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_123 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_124 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_125 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_126 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_127 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_128 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_129 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_130 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_131 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_132 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_133 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_134 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_135 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_136 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_137 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_138 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_139 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_140 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_141 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_142 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_143 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_144 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_145 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_146 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_147 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_148 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_149 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_150 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_151 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_152 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_153 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_154 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_155 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_156 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_157 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_158 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_159 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_160 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_161 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_162 | 1.0 | 0.0 | 1.0 |
| PBDDACGI_163 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_164 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_165 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_166 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_167 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_168 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_169 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_170 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_171 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_172 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_173 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_174 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_175 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_176 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_177 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_178 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_179 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_180 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_181 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_182 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_183 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_184 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_185 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_186 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_187 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_188 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_189 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_190 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_191 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_192 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_193 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_194 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_195 | 0.0 | 1.0 | 0.0 |
| PBDDACGI_196 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBDDACGI_104 | 60183 | 64958 | False | Siphoviridae | VOG4556, |
| PBDDACGI_118 | 12002 | 15954 | False | Unknown | VOG8909, |
| PBDDACGI_119 | 131904 | 142615 | False | Unknown | VOG0083, |
| PBDDACGI_136 | 4061 | 10860 | False | Unknown | VOG6366, |
Phigaro v2.4.0 (Database: Jan. 2024 release)