Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPICJOIA_2 | 6870 | 7733 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| CPICJOIA_2 | 5558 | 6694 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| CPICJOIA_2 | 4220 | 5359 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| CPICJOIA_2 | 3114 | 3914 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPICJOIA_2 | 3114 | 3914 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| CPICJOIA_2 | 5528 | 6694 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPICJOIA_2 | 6870 | 7730 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| CPICJOIA_2 | 5528 | 6691 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| CPICJOIA_2 | 4220 | 5356 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| CPICJOIA_2 | 3117 | 3914 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPICJOIA_1 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_2 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_3 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_4 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_5 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_6 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_7 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_8 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_9 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_10 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_11 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_12 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_13 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_14 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_15 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_16 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_17 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_18 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_19 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_20 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_21 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_22 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_23 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_24 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_25 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_26 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_27 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_28 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_29 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_30 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_31 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_32 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_33 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_34 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_35 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_36 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_37 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_38 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_39 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_40 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_41 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_42 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_43 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_44 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_45 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_46 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_47 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_48 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_49 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_50 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_51 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_52 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_53 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_54 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_55 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_56 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_57 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_58 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_59 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_60 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_61 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_62 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_63 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_64 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_65 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_66 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_67 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_69 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_70 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_71 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_72 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_73 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_74 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_75 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_76 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_77 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_78 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_79 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_80 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_81 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_82 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_83 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_84 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_85 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_86 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_87 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_88 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_89 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_90 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_91 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_92 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_93 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_94 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_95 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_96 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_97 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_98 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_99 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_100 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_101 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_102 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_103 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_104 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_106 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_107 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_108 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_109 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_110 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_111 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_112 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_113 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_114 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_115 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_116 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_117 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_118 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_119 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_120 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_121 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_122 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_123 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_124 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_125 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_127 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_128 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_129 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_130 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_132 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_133 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_134 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_135 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_136 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_137 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_139 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_140 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_141 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_142 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_143 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_144 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_145 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_146 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_147 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_148 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_149 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_150 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_151 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_152 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_153 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_154 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_155 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_156 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_157 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_158 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_159 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_160 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_161 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_162 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_163 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_164 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_165 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_166 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_167 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_168 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_169 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_170 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_171 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_172 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_173 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_174 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_175 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_176 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_177 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_178 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_179 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_180 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_181 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_182 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_183 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_184 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_185 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_186 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_187 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_188 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_189 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_190 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_191 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_192 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_193 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_194 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_195 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_196 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_197 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_198 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_199 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_200 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_201 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_202 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_203 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_204 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_205 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_206 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_207 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_208 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_209 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_210 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_211 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_212 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_213 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_214 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_215 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_216 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_217 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_218 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_219 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_220 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_221 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_222 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_223 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_224 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_225 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_226 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_227 | 1.0 | 0.0 | 1.0 |
| CPICJOIA_228 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_229 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_230 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_231 | 0.0 | 1.0 | 0.0 |
| CPICJOIA_232 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPICJOIA_110 | 60183 | 64958 | False | Siphoviridae | VOG4556, |
| CPICJOIA_111 | 130135 | 140846 | False | Unknown | VOG0083, |
| CPICJOIA_153 | 11823 | 15775 | False | Unknown | VOG8909, |
| CPICJOIA_172 | 35931 | 42730 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)