Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGHEKCIF_1 | 5667 | 6530 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HGHEKCIF_1 | 4355 | 5491 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| HGHEKCIF_1 | 3017 | 4156 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| HGHEKCIF_1 | 1911 | 2711 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| HGHEKCIF_121 | 3 | 1631 | tet(Q) | ARO:3000191 | tet(Q) | 96.50 | 82.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HGHEKCIF_1 | 1911 | 2711 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| HGHEKCIF_1 | 4325 | 5491 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| HGHEKCIF_121 | 1 | 1583 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.43 | 82.19 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGHEKCIF_1 | 5667 | 6527 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HGHEKCIF_1 | 4325 | 5488 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| HGHEKCIF_1 | 3017 | 4153 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| HGHEKCIF_1 | 1914 | 2711 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| HGHEKCIF_121 | 3 | 1583 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.43 | 82.22 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGHEKCIF_1 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_2 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_3 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_4 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_5 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_6 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_7 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_8 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_9 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_10 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_11 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_12 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_13 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_14 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_15 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_16 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_17 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_18 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_19 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_20 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_21 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_22 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_23 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_24 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_25 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_26 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_27 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_28 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_29 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_30 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_31 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_32 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_33 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_34 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_35 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_36 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_37 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_38 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_39 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_40 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_41 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_42 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_43 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_44 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_45 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_46 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_47 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_48 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_49 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_50 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_51 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_52 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_53 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_54 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_55 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_56 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_57 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_58 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_59 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_60 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_61 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_62 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_63 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_64 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_65 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_66 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_67 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_68 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_69 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_70 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_71 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_72 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_73 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_74 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_75 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_76 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_77 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_78 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_79 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_80 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_81 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_82 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_83 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_84 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_85 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_86 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_87 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_88 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_89 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_90 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_91 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_92 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_93 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_94 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_95 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_96 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_97 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_98 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_99 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_100 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_101 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_102 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_103 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_104 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_105 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_106 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_107 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_108 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_109 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_110 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_112 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_113 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_114 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_115 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_116 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_117 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_118 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_119 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_120 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_121 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_122 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_123 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_124 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_125 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_126 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_127 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_128 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_129 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_130 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_131 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_132 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_133 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_134 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_135 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_136 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_137 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_138 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_139 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_140 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_141 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_142 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_143 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_144 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_145 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_146 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_147 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_148 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_149 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_150 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_151 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_152 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_153 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_154 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_155 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_156 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_157 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_158 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_159 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_160 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_161 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_162 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_163 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_164 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_165 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_166 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_167 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_168 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_169 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_170 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_171 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_172 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_173 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_174 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_175 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_176 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_177 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_178 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_179 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_180 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_181 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_182 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_183 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_184 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_185 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_186 | 1.0 | 0.0 | 1.0 |
| HGHEKCIF_187 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_188 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_189 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_190 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_191 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_192 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_193 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_194 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_195 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_196 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_197 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_198 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_199 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_200 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_201 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_202 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_203 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_204 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_205 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_206 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_207 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_208 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_209 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_210 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_211 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_212 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_213 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_214 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_215 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_216 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_217 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_218 | 0.0 | 1.0 | 0.0 |
| HGHEKCIF_219 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGHEKCIF_112 | 60183 | 64958 | False | Siphoviridae | VOG4556, |
| HGHEKCIF_137 | 11823 | 15775 | False | Unknown | VOG8909, |
| HGHEKCIF_139 | 130397 | 141108 | False | Unknown | VOG0083, |
| HGHEKCIF_156 | 3824 | 10623 | False | Unknown | VOG6366, |
| HGHEKCIF_188 | 3142 | 10923 | False | Unknown | VOG3699, |
Phigaro v2.4.0 (Database: Jan. 2024 release)