Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMDCGDEF_38 | 28616 | 30541 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
| AMDCGDEF_38 | 18519 | 19253 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AMDCGDEF_38 | 18519 | 19253 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| AMDCGDEF_38 | 28616 | 30541 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.82 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMDCGDEF_38 | 18519 | 19250 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| AMDCGDEF_38 | 28616 | 30538 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AMDCGDEF_1 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_3 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_4 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_5 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_6 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_7 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_8 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_9 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_10 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_11 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_12 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_13 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_14 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_15 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_16 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_17 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_18 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_19 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_20 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_21 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_22 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_23 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_24 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_25 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_26 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_27 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_28 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_29 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_30 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_31 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_32 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_33 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_34 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_35 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_36 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_37 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_38 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_39 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_40 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_41 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_42 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_43 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_44 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_45 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_46 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_47 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_48 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_49 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_50 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_51 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_52 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_53 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_54 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_55 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_56 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_57 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_58 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_59 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_60 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_61 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_62 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_63 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_64 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_65 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_66 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_67 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_68 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_69 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_70 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_71 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_72 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_73 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_74 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_75 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_76 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_77 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_78 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_79 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_80 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_81 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_82 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_83 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_84 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_85 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_86 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_87 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_88 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_89 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_90 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_91 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_92 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_93 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_94 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_95 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_96 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_97 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_98 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_99 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_100 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_101 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_102 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_103 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_104 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_105 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_106 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_107 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_108 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_109 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_110 | 1.0 | 0.0 | 1.0 |
| AMDCGDEF_111 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_112 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_113 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_114 | 0.0 | 1.0 | 0.0 |
| AMDCGDEF_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AMDCGDEF_26 | 65896 | 75906 | False | Unknown | VOG3992, |
| AMDCGDEF_81 | 42484 | 50355 | True | Siphoviridae | VOG6282, |
| AMDCGDEF_115 | 190438 | 201744 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)