Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIMAOHOD_104 | 28616 | 30541 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
| PIMAOHOD_104 | 18519 | 19253 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PIMAOHOD_104 | 18519 | 19253 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| PIMAOHOD_104 | 28616 | 30541 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.82 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIMAOHOD_104 | 18519 | 19250 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| PIMAOHOD_104 | 28616 | 30538 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PIMAOHOD_1 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_2 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_3 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_4 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_5 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_6 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_7 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_8 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_9 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_10 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_11 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_12 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_13 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_14 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_15 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_16 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_17 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_18 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_19 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_20 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_21 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_22 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_23 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_24 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_25 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_26 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_27 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_28 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_29 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_30 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_31 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_32 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_33 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_34 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_35 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_36 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_37 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_38 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_39 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_40 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_41 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_42 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_43 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_44 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_45 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_46 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_47 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_48 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_49 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_50 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_51 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_52 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_53 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_54 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_55 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_56 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_57 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_58 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_59 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_60 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_61 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_62 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_63 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_64 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_65 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_66 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_67 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_68 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_69 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_70 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_71 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_72 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_73 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_74 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_75 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_76 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_77 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_78 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_79 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_80 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_81 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_82 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_83 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_84 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_85 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_86 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_87 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_88 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_89 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_90 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_91 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_92 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_93 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_94 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_95 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_96 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_97 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_98 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_99 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_100 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_101 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_102 | 0.0 | 1.0 | 0.0 |
| PIMAOHOD_103 | 1.0 | 0.0 | 1.0 |
| PIMAOHOD_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PIMAOHOD_10 | 66171 | 76181 | False | Unknown | VOG3992, |
| PIMAOHOD_26 | 26344 | 37219 | False | Siphoviridae | VOG0749, |
| PIMAOHOD_62 | 2692 | 7912 | True | Siphoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)