Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFGLIDDP_20 | 340383 | 341117 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| LFGLIDDP_20 | 329095 | 331020 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LFGLIDDP_20 | 340383 | 341117 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| LFGLIDDP_20 | 329095 | 331020 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.82 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFGLIDDP_20 | 340386 | 341117 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| LFGLIDDP_20 | 329098 | 331020 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFGLIDDP_1 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_2 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_3 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_4 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_5 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_6 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_7 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_8 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_9 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_10 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_11 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_12 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_13 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_14 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_15 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_16 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_17 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_18 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_19 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_20 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_21 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_22 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_23 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_24 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_25 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_26 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_27 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_28 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_29 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_30 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_31 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_32 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_33 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_34 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_35 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_36 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_37 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_38 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_39 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_40 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_41 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_42 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_43 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_44 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_45 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_46 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_47 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_48 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_49 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_50 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_51 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_52 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_53 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_54 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_55 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_56 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_57 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_58 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_59 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_60 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_61 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_62 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_63 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_64 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_65 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_66 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_67 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_68 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_69 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_70 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_71 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_72 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_73 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_74 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_75 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_76 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_77 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_78 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_79 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_80 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_81 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_82 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_83 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_84 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_85 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_86 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_87 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_88 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_89 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_90 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_91 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_92 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_93 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_94 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_95 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_96 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_97 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_98 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_99 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_100 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_101 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_102 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_103 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_104 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_105 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_106 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_107 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_108 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_109 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_110 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_111 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_112 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_113 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_114 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_115 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_116 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_118 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_119 | 0.0 | 1.0 | 0.0 |
| LFGLIDDP_121 | 1.0 | 0.0 | 1.0 |
| LFGLIDDP_122 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFGLIDDP_18 | 67617 | 77627 | False | Unknown | VOG3992, |
| LFGLIDDP_39 | 26344 | 37219 | False | Siphoviridae | VOG0749, |
| LFGLIDDP_76 | 23003 | 30341 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)