Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGMDNEFB_55 | 160207 | 162132 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGMDNEFB_55 | 160207 | 162132 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGMDNEFB_55 | 160207 | 162129 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OGMDNEFB_1 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_2 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_3 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_4 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_5 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_6 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_7 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_8 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_9 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_10 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_11 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_12 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_13 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_14 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_15 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_16 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_17 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_18 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_19 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_20 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_21 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_22 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_23 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_24 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_25 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_26 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_27 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_28 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_29 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_30 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_31 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_32 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_33 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_34 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_35 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_36 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_37 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_38 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_39 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_40 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_41 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_42 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_43 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_44 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_45 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_46 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_47 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_48 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_49 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_50 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_51 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_52 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_53 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_54 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_55 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_56 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_57 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_58 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_59 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_60 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_61 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_62 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_63 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_64 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_65 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_66 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_67 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_68 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_69 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_70 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_71 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_72 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_73 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_74 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_75 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_76 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_77 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_78 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_79 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_80 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_81 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_82 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_83 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_84 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_85 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_87 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_88 | 0.0 | 1.0 | 0.0 |
| OGMDNEFB_90 | 1.0 | 0.0 | 1.0 |
| OGMDNEFB_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OGMDNEFB_10 | 9132 | 16617 | False | Siphoviridae | VOG0204, |
| OGMDNEFB_15 | 6893 | 17468 | False | Siphoviridae | VOG0749, |
| OGMDNEFB_25 | 34830 | 44250 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)