Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDMEIAJC_190 | 5667 | 6530 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LDMEIAJC_190 | 4355 | 5491 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| LDMEIAJC_190 | 3017 | 4156 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LDMEIAJC_190 | 1911 | 2711 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| LDMEIAJC_103 | 428 | 2401 | tet(Q) | ARO:3000191 | tet(Q) | 96.65 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LDMEIAJC_190 | 1911 | 2711 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LDMEIAJC_190 | 4325 | 5491 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| LDMEIAJC_103 | 428 | 2353 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDMEIAJC_190 | 5667 | 6527 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LDMEIAJC_190 | 4325 | 5488 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| LDMEIAJC_190 | 3017 | 4153 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| LDMEIAJC_190 | 1914 | 2711 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| LDMEIAJC_103 | 431 | 2353 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.91 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LDMEIAJC_1 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_2 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_3 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_4 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_5 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_6 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_7 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_8 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_9 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_10 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_11 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_12 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_13 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_14 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_15 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_16 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_17 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_18 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_19 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_20 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_21 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_22 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_23 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_24 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_25 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_26 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_27 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_28 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_29 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_30 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_31 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_32 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_33 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_34 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_35 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_36 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_37 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_38 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_39 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_40 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_41 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_42 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_43 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_44 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_45 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_46 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_47 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_48 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_49 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_50 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_51 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_52 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_53 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_54 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_55 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_56 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_57 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_58 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_59 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_60 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_61 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_62 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_63 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_64 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_65 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_66 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_67 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_68 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_69 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_70 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_71 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_72 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_73 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_74 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_75 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_76 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_77 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_78 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_79 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_80 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_81 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_82 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_83 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_84 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_85 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_86 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_87 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_88 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_89 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_90 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_91 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_92 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_93 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_94 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_95 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_96 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_98 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_99 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_100 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_101 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_102 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_103 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_104 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_105 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_106 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_107 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_108 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_109 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_110 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_111 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_112 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_113 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_114 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_115 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_116 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_117 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_118 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_119 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_120 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_121 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_122 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_123 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_124 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_125 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_126 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_127 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_128 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_129 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_130 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_131 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_132 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_133 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_135 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_137 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_138 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_139 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_140 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_141 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_142 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_143 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_144 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_145 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_146 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_147 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_148 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_149 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_150 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_151 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_152 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_153 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_154 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_155 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_156 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_157 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_158 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_159 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_160 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_161 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_162 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_163 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_164 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_165 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_166 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_168 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_169 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_170 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_171 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_173 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_174 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_175 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_176 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_177 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_178 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_179 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_180 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_181 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_182 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_183 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_184 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_185 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_186 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_187 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_188 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_189 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_190 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_191 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_192 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_193 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_194 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_195 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_196 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_197 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_198 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_199 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_200 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_201 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_202 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_203 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_204 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_205 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_206 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_207 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_208 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_209 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_210 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_211 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_212 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_213 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_214 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_215 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_216 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_217 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_218 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_219 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_220 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_221 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_222 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_223 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_224 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_225 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_226 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_227 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_228 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_229 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_230 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_231 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_232 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_233 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_234 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_235 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_236 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_237 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_238 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_239 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_240 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_241 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_242 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_243 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_244 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_245 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_246 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_247 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_248 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_249 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_250 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_251 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_252 | 1.0 | 0.0 | 1.0 |
| LDMEIAJC_253 | 0.0 | 1.0 | 0.0 |
| LDMEIAJC_254 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LDMEIAJC_88 | 58171 | 65540 | False | Siphoviridae | VOG4581, |
| LDMEIAJC_111 | 130135 | 140846 | False | Unknown | VOG0083, |
| LDMEIAJC_174 | 11823 | 15775 | False | Unknown | VOG8909, |
| LDMEIAJC_214 | 3824 | 10623 | False | Unknown | VOG6366, |
Phigaro v2.4.0 (Database: Jan. 2024 release)